Crop & Soil Sciences

University of Georgia

20 Recent Publications

This is a list of the 20 publications most recently added to the Research Profiles database. This shows the publication activity that is ongoing at the institution.The source of publications for this application is a combination of Scopus and researcher data.

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• 1.

  2013

  Anne Roulin; Paul L. Auer; Marc Libault; Jessica Schlueter; Andrew Farmer; Greg May; Gary Stacey; Rebecca W. Doerge; Scott A. Jackson

  The fate of duplicated genes in a polyploid plant genome

  Plant Journal. 2013;73(1):143-153.

• 2.

  2012

  Dongying Gao; Jinfeng Chen; Mingsheng Chen; Blake C. Meyers; Scott Jackson

  A highly conserved, small LTR retrotransposon that preferentially targets genes in grass genomes

  PLoS ONE. 2012;7(2).

• 3.

  2012

  Mahendar Thudi; Yupeng Li; Scott A. Jackson; Gregory D. May; Rajeev K. Varshney

  Current state-of-art of sequencing technologies for plant genomics research

  Briefings in Functional Genomics. 2012;11(1):3-11.

• 4.

  2012

  Rajeev K. Varshney; Wenbin Chen; Yupeng Li; Arvind K. Bharti; Rachit K. Saxena; Jessica A. Schlueter; Mark T. A. Donoghue; Sarwar Azam; Guangyi Fan; Adam M. Whaley; et al.

  Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers

  Nature Biotechnology. 2012;30(1):83-89.

• 5.

  2012

  Dongying Gao; Jose C. Jimenez-Lopez; Aiko Iwata; Navdeep Gill; Scott A. Jackson

  Functional and Structural Divergence of an Unusual LTR Retrotransposon Family in Plants

  PLoS ONE. 2012;7(10).

• 6.

  2012

  Pu Huang; Jeanmaire Molina; Jonathan M. Flowers; Samara Rubinstein; Scott A. Jackson; Michael D. Purugganan; Barbara A. Schaal

  Phylogeography of Asian wild rice, Oryza rufipogon: A genome-wide view

  Molecular Ecology. 2012;21(18):4593-4604.

• 7.

  2011

  Anuja Dubey; Andrew Farmer; Jessica Schlueter; Steven B. Cannon; Brian Abernathy; Reetu Tuteja; Jimmy Woodward; Trushar Shah; Benjamin Mulasmanovic; Himabindu Kudapa; et al.

  Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in Pigeonpea (Cajanus cajan L.)

  DNA Research. 2011;18(3):153-164.

• 8.

  2011

  Benoit Piegu; Romain Guyot; Nathalie Picault; Anne Roulin; Abhijit Sanyal; Hyeran Kim; Kristi Collura; Darshan S. Brar; Scott Jackson; Rod A. Wing; et al.

  Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice (Genome Research (2006) 16, (1262-1269))

  Genome Research. 2011;21(7):1201.

• 9.

  2011

  Zhixi Tian; Yanjun Yu; Feng Lin; Yeisoo Yu; Phillip J. SanMiguel; Rod A. Wing; Susan R. McCouch; Jianxin Ma; Scott A. Jackson

  Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis

  BMC Genomics. 2011;12.

• 10.

  2011

  Jixian Zhai; Dong-Hoon Jeong; Emanuele de Paoli; Sunhee Park; Benjamin D. Rosen; Yupeng Li; Alvaro J. González; Zhe Yan; Sherry L. Kitto; Michael A. Grusak; et al.

  MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

  Genes and Development. 2011;25(23):2540-2553.

• 11.

  2011

  Dongying Gao; Zhiyun Gong; Rod A. Wing; Jiming Jiang; Scott A. Jackson

  Molecular and Cytological Characterization of Centromeric Retrotransposons in a Wild Relative of Rice, Oryza granulata

  Tropical Plant Biology. 2011;4(3-4):217-227.

• 12.

  2011

  Jeanmaire Molina; Martin Sikora; Nandita Garud; Jonathan M. Flowers; Samara Rubinstein; Andy Reynolds; Pu Huang; Scott Jackson; Barbara A. Schaal; Carlos D. Bustamante; et al.

  Molecular evidence for a single evolutionary origin of domesticated rice

  Proceedings of the National Academy of Sciences of the United States of America. 2011;108(20):8351-8356.

• 13.

  2011

  Jeanmaire Molina; Martin Sikora; Nandita Garud; Jonathan M. Flowers; Samara Rubinstein; Andy Reynolds; Pu Huang; Scott A. Jackson; Barbara A. Schaal; Carlos D. Bustamante; et al.

  Reply to Ge and Sang: A single origin of domesticated rice

  Proceedings of the National Academy of Sciences of the United States of America. 2011;108(39):E756.

• 14.

  2011

  Scott A. Jackson; Aiko Iwata; Suk-Ha Lee; Jeremy Schmutz; Randy Shoemaker

  Sequencing crop genomes: Approaches and applications

  New Phytologist. 2011;191(4):915-925.

• 15.

  2010

  Andrea Zuccolo; Aswathy Sebastian; Yeisoo Yu; Scott Jackson; Steve Rounsley; Dean Billheimer; Rod A. Wing

  Assessing the extent of substitution rate variation of retrotransposon Long Terminal Repeat sequences in Oryza sativa and Oryza glaberrima

  Rice. 2010;3(4):242-250.

• 16.

  2010

  Navdeep Gill; Phillip SanMiguel; Braham Deep Singh Dhillon; Brian Abernathy; HyeRan Kim; Lincoln Stein; Doreen Ware; Rod Wing; Scott A. Jackson

  Dynamic Oryza genomes: Repetitive DNA sequences as genome modeling agents

  Rice. 2010;3(4):251-269.

• 17.

  2010

  Abhijit Sanyal; Jetty S.S. Ammiraju; Fei Lu; Yeisoo Yu; Teri Rambo; Jennifer Currie; Kristi Kollura; Hye-Ran Kim; Jinfeng Chen; Jianxin Ma; et al.

  Orthologous comparisons of the Hd1 region across genera reveal hd1 gene lability within diploid oryza species and disruptions to microsynteny in sorghum

  Molecular Biology and Evolution. 2010;27(11):2487-2506.

• 18.

  2010

  K. Andree; Jan Axtner; M.J. Bagley; E.J. Barlow; T.J.C. Beebee; J.L. Bennetzen; Eldredge Bermingham; M.C. Boisselier-Dubayle; C.A. Bozarth; C.P. Brooks; et al.

  Permanent genetic resources added to molecular ecology resources database 1 April 2010 - 31 May 2010

  Molecular Ecology Resources. 2010;10(6):1098-1105.

• 19.

  2010

  Bonnie L. Hurwitz; Dave Kudrna; Yeisoo Yu; Aswathy Sebastian; Andrea Zuccolo; Scott A. Jackson; Doreen Ware; Rod A. Wing; Lincoln Stein

  Rice structural variation: A comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza

  Plant Journal. 2010;63(6):990-1003.

• 20.

  2010

  Moon Young Kim; Sunghoon Lee; Kyujung Van; Tae-Hyung Kim; Soon-Chun Jeong; Ik-Young Choi; Dae-Soo Kim; Yong-Seok Lee; Daeui Park; Jianxin Ma; et al.

  Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome

  Proceedings of the National Academy of Sciences of the United States of America. 2010;107(51):22032-22037.