A. Keith Dunker

School of Medicine, Biochemistry & Molecular Biology

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A. Keith Dunker

• School of Medicine
  School of Medicine
  
  Biochemistry & Molecular Biology
  
  

  Current Appointments:

  T.K. Li Professor of Medical Research

  
  
  

This is a list of publications by this researcher, listed chronologically starting with the most recent first. New publications appear in this list weekly. The source of publications and 'cited by' data for this application is Scopus.

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• 1.

  2013

  Motonori Ota; Ryotaro Koike; Takayuki Amemiya; Takeshi Tenno; Pedro R. Romero; Hidekazu Hiroaki; A. Keith Dunker; Satoshi Fukuchi

  An assignment of intrinsically disordered regions of proteins based on NMR structures

  Journal of Structural Biology. 2013;181(1):29-36.
  0

• 2.

  2013

  Christopher J. Oldfield; Bin Xue; Ya-Yue Van; Eldon L. Ulrich; John L. Markley; A. Keith Dunker; Vladimir N. Uversky

  Utilization of protein intrinsic disorder knowledge in structural proteomics

  Biochimica et Biophysica Acta - Proteins and Proteomics. 2013;1834(2):487-498.
  0

• 3.

  2013

  Vladimir N. Uversky; A. Keith Dunker

  The case for intrinsically disordered proteins playing contributory roles in molecular recognition without a stable 3D structure

  F1000 Biology Reports. 2013;5(1).
  2

• 4.

  2013

  Bin Xue; Celeste J. Brown; A. Keith Dunker; Vladimir N. Uversky

  Intrinsically disordered regions of p53 family are highly diversified in evolution

  Biochimica et Biophysica Acta - Proteins and Proteomics. 2013;1834(4):725-738.
  0

• 5.

  2013

  Matt E. Oates; Pedro Romero; Takashi Ishida; Mohamed Ghalwash; Marcin J. Mizianty; Bin Xue; Zsuzsanna Dosztányi; Vladimir N. Uversky; Zoran Obradovic; Lukasz Kurgan; et al.

  D²P²: Database of disordered protein predictions

  Nucleic Acids Research. 2013;41(D1):D508-D516.
  0

• 6.

  2013

  Bin Xue; Pedro R. Romero; Maria Noutsou; Madelon M. Maurice; Stefan G.D. Rüdiger; Albert M. William Jr.; Marcin J. Mizianty; Lukasz Kurgan; Vladimir N. Uversky; A. Keith Dunker

  Stochastic machines as a colocalization mechanism for scaffold protein function

  FEBS Letters. 2013.
  0

• 7.

  2012

  Mike Boxem; Zoltan Maliga; Niels Klitgord; Na Li; Irma Lemmens; Miyeko Mana; Lorenzo De Lichtervelde; Joram D. Mul; Diederik Van De Peut; Maxime Devos; et al.

  Erratum: A protein domain-based interactome network for C. elegans early embryogenesis (Cell (2008) 134 (534-545))

  Cell. 2012;151(7):1633.
  0

• 8.

  2012

  Mohamed F. Ghalwash; A. Keith Dunker; Zoran Obradović

  Uncertainty analysis in protein disorder prediction

  Molecular BioSystems. 2012;8(1):381-391.
  2

• 9.

  2012

  Bin Xue; Christopher J. Oldfield; Ya-Yue Van; A. Keith Dunker; Vladimir N. Uversky

  Protein intrinsic disorder and induced pluripotent stem cells

  Molecular BioSystems. 2012;8(1):134-150.
  1

• 10.

  2012

  Tuo Zhang; Eshel Faraggi; Bin Xue; A. Keith Dunker; Vladimir N. Uversky; Yaoqi Zhou

  SPINE-D: Accurate prediction of short and long disordered regions by a single neural-network based method

  Journal of Biomolecular Structure and Dynamics. 2012;29(4):799-813.
  5

• 11.

  2012

  Julie Rumi-Masante; Farai I. Rusinga; Terrence E. Lester; Tori B. Dunlap; Todd D. Williams; A. Keith Dunker; David D. Weis; Trevor P. Creamer

  Structural basis for activation of calcineurin by calmodulin

  Journal of Molecular Biology. 2012;415(2):307-317.
  2

• 12.

  2012

  Vladimir N. Uversky; A. Keith Dunker

  Multiparametric analysis of intrinsically disordered proteins: Looking at intrinsic disorder through compound eyes

  Analytical Chemistry. 2012;84(5):2096-2104.
  8

• 13.

  2012

  Bin Xue; A. Keith Dunker; Vladimir N. Uversky

  The roles of intrinsic disorder in orchestrating the Wnt-pathway

  Journal of Biomolecular Structure and Dynamics. 2012;29(5):843-861.
  2

• 14.

  2012

  Bin Xue; A. Keith Dunker; Vladimir N. Uversky

  Orderly order in protein intrinsic disorder distribution: Disorder in 3500 proteomes from viruses and the three domains of life

  Journal of Biomolecular Structure and Dynamics. 2012;30(2):137-149.
  13

• 15.

  2012

  Jiangang Liu; Shuyu Li; A. Keith Dunker; Vladimir N. Uversky

  Molecular profiling - An essential technology enabling personalized medicine in breast cancer

  Current Drug Targets. 2012;13(4):541-554.
  0

• 16.

  2012

  Fatemeh Miri Disfani; Wei-Lun Hsu; Marcin J. Mizianty; Christopher J. Oldfield; Bin Xue; A. Keith Dunker; Vladimir N. Uversky; Lukasz Kurgan

  MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins

  Bioinformatics. 2012;28(12):i75-i83.
  7

• 17.

  2012

  Vladimir N. Uversky; A. Keith Dunker

  Preface

  Methods in Molecular Biology. 2012;895:v.
  0

• 18.

  2012

  Aaron A. Santner; Carrie H. Croy; Farha H. Vasanwala; Vladimir N. Uversky; Ya-Yue J. Van; A. Keith Dunker

  Sweeping away protein aggregation with entropic bristles: Intrinsically disordered protein fusions enhance soluble expression

  Biochemistry. 2012;51(37):7250-7262.
  3

• 19.

  2012

  Derrick E. Johnson; Bin Xue; Megan D. Sickmeier; Jingwei Meng; Marc S. Cortese; Christopher J. Oldfield; Tanguy Le Gall; A. Keith Dunker; Vladimir N. Uversky

  High-throughput characterization of intrinsic disorder in proteins from the Protein Structure Initiative

  Journal of Structural Biology. 2012;180(1):201-215.
  1

• 20.

  2012

  David P. Sargeant; Michael R. Gryk; Mark W. Maciejewski; Vishal Thapar; Vamsi Kundeti; Sanguthevar Rajasekaran; Pedro Romero; Keith Dunker; Shun-Cheng Li; Tomonori Kaneko; et al.

  Secondary Structure, a Missing Component of Sequence-Based Minimotif Definitions

  PLoS ONE. 2012;7(12).
  0

• 21.

  2011

  Yang Hu; Yunlong Liu; Jeesun Jung; A Keith Dunker; Yadong Wang

  Changes in predicted protein disorder tendency may contribute to disease risk

  BMC Genomics. 2011;12(SUPPL. 5).
  1

• 22.

  2011

  Stacy E. Dixon; Micah M. Bhatti; Vladimir N. Uversky; A. Keith Dunker; William J. Sullivan Jr.

  Regions of intrinsic disorder help identify a novel nuclear localization signal in Toxoplasma gondii histone acetyltransferase TgGCN5-B

  Molecular and Biochemical Parasitology. 2011;175(2):192-195.
  3

• 23.

  2011

  A. Keith Dunker; Richard W. Kriwacki

  The orderly chaos of proteins

  Scientific American. 2011;304(4):48-53.
  1

• 24.

  2011

  A Keith Dunker; Richard W Kriwacki

  The orderly chaos of proteins.

  Scientific American. 2011;304(4):68-73.
  1

• 25.

  2011

  A. Keith Dunker; Julian Gough

  Sequences and topology: Intrinsic disorder in the evolving universe of protein structure

  Current Opinion in Structural Biology. 2011;21(3):379-381.
  4

• 26.

  2011

  Marcin J. Mizianty; Tuo Zhang; Bin Xue; Yaoqi Zhou; A K. Dunker; Vladimir N. Uversky; Lukasz Kurgan

  In-silico prediction of disorder content using hybrid sequence representation

  BMC Bioinformatics. 2011;12.
  7

• 27.

  2011

  Emiliano J. Sanchez; Gerhard R. Munske; Angela Criswell; Hendrik Milting; A. Keith Dunker; Chulhee Kang

  Phosphorylation of human calsequestrin: Implications for calcium regulation

  Molecular and Cellular Biochemistry. 2011;353(1-2):195-204.
  4

• 28.

  2011

  Fei Huang; Christopher J. Oldfield; Xue Bin; Jingwei Meng; Weilun Hsu; Vladimir N. Uversky; A. Keith Dunker

  Erratum: (Biophysical Journal)

  Biophysical Journal. 2011;100(9):2329.
  0

• 29.

  2011

  Wei-Lun Hsu; Christopher J. Oldfield; Bin Xue; Maya Wagle; Jingwei Meng; Fei Huang; Caron Morales; Vladimir N. Uversky; A. Keith Dunker

  Erratum: (Biophysical Journal)

  Biophysical Journal. 2011;100(9):2329.
  0

• 30.

  2011

  Caron Morales; Christopher J. Oldfield; Wei-Lun Hsu; Fei Huang; Jingwei Meng; Maya R. Wagle; Rachel J. Rehlander; Robert W. Williams; Sirisha Peyetti; Yuni Xia; et al.

  Erratum: (Biophysical Journal)

  Biophysical Journal. 2011;100(9):2328.
  0

• 31.

  2011

  Bin Xue; Daniel Soeria-Atmadja; Mats G. Gustafsson; Ulf Hammerling; A. Keith Dunker; Vladimir N. Uversky

  Abundance and functional roles of intrinsic disorder in allergenic proteins and allergen representative peptides

  Proteins: Structure, Function and Bioinformatics. 2011;79(9):2595-2606.
  3

• 32.

  2011

  Xiaolin Sun; Bin Xue; William T. Jones; Erik Rikkerink; A. Keith Dunker; Vladimir N. Uversky

  A functionally required unfoldome from the plant kingdom: Intrinsically disordered N-terminal domains of GRAS proteins are involved in molecular recognition during plant development

  Plant Molecular Biology. 2011;77(3):205-223.
  9

• 33.

  2011

  Jiangang Liu; Robert A. Jolly; Aaron T. Smith; George H. Searfoss; Keith M. Goldstein; Vladimir N. Uversky; Keith Dunker; Shuyu Li; Craig E. Thomas; Tao Wei

  Predictive power estimation algorithm (PPEA) - a new algorithm to reduce overfitting for genomic biomarker discovery

  PLoS ONE. 2011;6(9).
  3

• 34.

  2011

  Celeste J Brown; Audra K Johnson; A Keith Dunker; Gary W Daughdrill

  Evolution and disorder

  Current Opinion in Structural Biology. 2011;21(3):441-446.
  24

• 35.

  2010

  Bin Xue; Roland L. Dunbrack; Robert W. Williams; A. Keith Dunker; Vladimir N. Uversky

  PONDR-FIT: A meta-predictor of intrinsically disordered amino acids

  Biochimica et Biophysica Acta - Proteins and Proteomics. 2010;1804(4):996-1010.
  90

• 36.

  2010

  Vladimir N. Uversky; A. Keith Dunker

  Understanding protein non-folding

  Biochimica et Biophysica Acta - Proteins and Proteomics. 2010;1804(6):1231-1264.
  211

• 37.

  2010

  Xiaolin Sun; William T. Jones; Dawn Harvey; Patrick J. B. Edwards; Steven M. Pascal; Christopher Kirk; Thérèse Considine; David J. Sheerin; Jasna Rakonjac; Christopher J. Oldfield; et al.

  N-terminal domains of DELLA proteins are intrinsically unstructured in the absence of interaction with GID1/gibberellic acid receptors

  Journal of Biological Chemistry. 2010;285(15):11557-11571.
  12

• 38.

  2010

  Bin Xue; Robert W. Williams; Christopher J. Oldfield; A K. Dunker; Vladimir N. Uversky

  Archaic chaos: Intrinsically disordered proteins in Archaea

  BMC Systems Biology. 2010;4(SUPPL. 1).
  14

• 39.

  2010

  Bin Xue; Wei-Lun Hsu; Jun-Ho Lee; Hua Lu; A. Keith Dunker; Vladimir N. Uversky

  SPA: Short peptide analyzer of intrinsic disorder status of short peptides

  Genes to Cells. 2010;15(6):635-646.
  2

• 40.

  2010

  Bin Xue; Robert W. Williams; Christopher J. Oldfield; Gerard Kian-Meng Goh; A. Keith Dunker; Vladimir N. Uversky

  Viral disorder or disordered viruses: Do viral proteins possess unique features?

  Protein and Peptide Letters. 2010;17(8):932-951.
  17

• 41.

  2010

  Bin Xue; A.Keith Dunker; Vladimir Uversky

  Retro-MoRFS: Identifying protein binding sites by normal and reverse alignment and intrinsic disorder prediction

  International Journal of Molecular Sciences. 2010;11(10):3725-3747.
  6

• 42.

  2010

  A Keith Dunker; Vladimir N Uversky

  Drugs for 'protein clouds': Targeting intrinsically disordered transcription factors

  Current Opinion in Pharmacology. 2010;10(6):782-788.
  34

• 43.

  2010

  Jack Y. Yang; Andrzej Niemierko; Ruzena Bajcsy; Dong Xu; Brian D. Athey; Aidong Zhang; Okan K. Ersoy; Guo-zheng Li; Mark Borodovsky; Joe C. Zhang; et al.

  2K09 and thereafter: The coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research

  BMC Genomics. 2010;11(SUPPL. 3).
  1

• 44.

  2010

  Jianjiong Gao; Jay J. Thelen; A. Keith Dunker; Dong Xu

  Musite, a tool for global prediction of general and kinase-specific phosphorylation sites

  Molecular and Cellular Proteomics. 2010;9(12):2586-2600.
  22

• 45.

  2010

  Russ B. Altman; A. Keith Dunker; Lawrence Hunter; Teri E. Klein

  Pacific symposium on biocomputing 2010

  Pacific Symposium on Biocomputing 2010, PSB 2010. 2010:v-vii.
  0

• 46.

  2009

  Russ B. Altman; A. Keith Dunker; Lawrence Hunter; Teri E. Klein

  Pacific symposium on biocomputing 2009

  Pacific Symposium on Biocomputing 2009, PSB 2009. 2009:v-vi.
  0

• 47.

  2009

  Shide Liang; Liwei Li; Wei-Lun Hsu; Meaghan N. Pilcher; Vladimir Uversky; Yaoqi Zhou; A. Keith Dunker; Samy O. Meroueh

  Exploring the molecular design of protein interaction sites with molecular dynamics simulations and free energy calculations

  Biochemistry. 2009;48(2):399-414.
  28

• 48.

  2009

  Peter Tompa; Monika Fuxreiter; Christopher J. Oldfield; Istvan Simon; A. Keith Dunker; Vladimir N. Uversky

  Close encounters of the third kind: Disordered domains and the interactions of proteins

  BioEssays. 2009;31(3):328-335.
  76

• 49.

  2009

  Bin Xue; Christopher J. Oldfield; A. Keith Dunker; Vladimir N. Uversky

  CDF it all: Consensus prediction of intrinsically disordered proteins based on various cumulative distribution functions

  FEBS Letters. 2009;583(9):1469-1474.
  27

• 50.

  2009

  Gerard Kian-Meng Goh; A Keith Dunker; Vladimir N Uversky

  Protein intrinsic disorder and influenza virulence: The 1918 H1N1 and H5N1 viruses

  Virology Journal. 2009;6.
  16

• 51.

  2009

  Jianjiong Gao; Ganesh Kumar Agrawal; Jay J. Thelen; Zoran Obradovic; A. Keith Dunker; Dong Xu

  A new machine learning approach for protein phosphorylation site prediction in plants

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2009;5462 LNBI:18-29.
  7

• 52.

  2009

  Bo He; Kejun Wang; Yunlong Liu; Bin Xue; Vladimir N. Uversky; A. Keith Dunker

  Predicting intrinsic disorder in proteins: An overview

  Cell Research. 2009;19(8):929-949.
  99

• 53.

  2009

  Corinne Rancurel; Mahvash Khosravi; A. Keith Dunker; Pedro R. Romero; David Karlin

  Overlapping genes produce proteins with unusual sequence properties and offer insight into de novo protein creation

  Journal of Virology. 2009;83(20):10719-10736.
  37

• 54.

  2009

  Uros Midic; A. Keith Dunker; Zoran Obradovic

  Protein sequence alignment and structural disorder: A substitution matrix for an extended alphabet

  Proceedings of the KDD-09 Workshop on Statistical and Relational Learning in Bioinformatics, StReBio '09. 2009:27-31.
  1

• 55.

  2009

  Bin Xue; Liwei Li; Samy O. Meroueh; Vladimir N. Uversky; A. Keith Dunker

  Analysis of structured and intrinsically disordered regions of transmembrane proteins

  Molecular BioSystems. 2009;5(12):1688-1702.
  11

• 56.

  2009

  Uros Midic; Christopher J. Oldfield; A. Keith Dunker; Zoran Obradovic; Vladimir N. Uversky

  Unfoldomics of human genetic diseases: Illustrative examples of ordered and intrinsically disordered members of the human diseasome

  Protein and Peptide Letters. 2009;16(12):1533-1547.
  16

• 57.

  2008

  Jack Y. Yang; Mary Q. Yang; A. Keith Dunker; Youping Deng; Xudong Huang

  Investigation of transmembrane proteins using a computational approach

  BMC Genomics. 2008;9(SUPPL. 1).
  13

• 58.

  2008

  Kimmo I. Rantalainen; Vladimir N. Uversky; Perttu Permi; Nisse Kalkkinen; A. Keith Dunker; Kristiina Mäkinen

  Potato virus A genome-linked protein VPg is an intrinsically disordered molten globule-like protein with a hydrophobic core

  Virology. 2008;377(2):280-288.
  19

• 59.

  2008

  Vladimir N. Uversky; Christopher J. Oldfield; A. Keith Dunker

  Intrinsically disordered proteins in human diseases: Introducing the D ² concept

  Annual Review of Biophysics. 2008;37:215-246.
  246

• 60.

  2008

  Mike Boxem; Zoltan Maliga; Niels Klitgord; Na Li; Irma Lemmens; Miyeko Mana; Lorenzo de Lichtervelde; Joram D. Mul; Diederik van de Peut; Maxime Devos; et al.

  A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis

  Cell. 2008;134(3):534-545.
  69

• 61.

  2008

  Oleg Paliy; Shawn M. Gargac; Yugong Cheng; Vladimir N. Uversky; A. Dunker

  Protein disorder is positively correlated with gene expression in escherichia coli

  Journal of Proteome Research. 2008;7(6):2234-2245.
  12

• 62.

  2008

  Marc S. Cortese; Vladimir N. Uversky; A. Keith Dunker

  Intrinsic disorder in scaffold proteins: Getting more from less

  Progress in Biophysics and Molecular Biology. 2008;98(1):85-106.
  70

• 63.

  2008

  A. Keith Dunker; Christopher J. Oldfield; Jingwei Meng; Pedro Romero; Jack Y. Yang; Jessica Walton Chen; Vladimir Vacic; Zoran Obradovic; Vladimir N. Uversky

  The unfoldomics decade: An update on intrinsically disordered proteins

  BMC Genomics. 2008;9(SUPPL. 2).
  172

• 64.

  2008

  Siyuan Ren; Vladimir N. Uversky; Zhengjun Chen; A. Keith Dunker; Zoran Obradovic

  Short Linear Motifs recognized by SH2, SH3 and Ser/Thr Kinase domains are conserved in disordered protein regions

  BMC Genomics. 2008;9(SUPPL. 2).
  22

• 65.

  2008

  Gerard Kian-Meng Goh; A. Keith Dunker; Vladimir N. Uversky

  Protein intrinsic disorder toolbox for comparative analysis of viral proteins

  BMC Genomics. 2008;9(SUPPL. 2).
  16

• 66.

  2008

  Andrew Campen; Ryan M. Williams; Celeste J. Brown; Jingwei Meng; Vladimir N. Uversky; A. Keith Dunker

  TOP-IDP-scale: A new amino acid scale measuring propensity for intrinsic disorder

  Protein and Peptide Letters. 2008;15(9):956-963.
  49

• 67.

  2008

  Gerard Kian-Meng Goh; A. Keith Dunker; Vladimir N. Uversky

  A comparative analysis of viral matrix proteins using disorder predictors

  Virology Journal. 2008;5.
  11

• 68.

  2008

  A Keith Dunker; Israel Silman; Vladimir N Uversky; Joel L Sussman

  Function and structure of inherently disordered proteins

  Current Opinion in Structural Biology. 2008;18(6):756-764.
  246

• 69.

  2008

  Vladimir N. Uversky; A. Keith Dunker

  Biochemistry: Controlled chaos

  Science. 2008;322(5906):1340-1341.
  33

• 70.

  2008

  Ágnes Tóth-Petróczy; Christopher J. Oldfield; István Simon; Yuichiro Takagi; A. Keith Dunker; Vladimir N. Uversky; Monika Fuxreiter

  Malleable machines in transcription regulation: The Mediator complex

  PLoS Computational Biology. 2008;4(12).
  20

• 71.

  2008

  Russ B. Altman; A. Keith Dunker; Lawrence Hunter; Teri E. Klein

  Pacific symposium on biocomputing 2008

  Pacific Symposium on Biocomputing 2008, PSB 2008. 2008:v-vi.
  0

• 72.

  2008

  Wei Zhang; A. Keith Dunker; Yaoqi Zhou

  Assessing secondary structure assignment of protein structures by using pairwise sequence-alignment benchmarks

  Proteins: Structure, Function and Genetics. 2008;71(1):61-67.
  5

• 73.

  2008

  A. Keith Dunker; Vladimir N. Uversky

  Signal transduction via unstructured protein conduits

  Nature Chemical Biology. 2008;4(4):229-230.
  43

• 74.

  2008

  Christopher J. Oldfield; Jingwei Meng; Jack Y. Yang; Mary Qu Qu; Vladimir N. Uversky; A Keith Dunker

  Flexible nets: Disorder and induced fit in the associations of p53 and 14-3-3 with their partners

  BMC Genomics. 2008;9(SUPPL. 1).
  132

• 75.

  2008

  Amrita Mohan; William J. Sullivan Jr; Predrag Radivojac; A. Keith Dunker; Vladimir N. Uversky

  Intrinsic disorder in pathogenic and non-pathogenic microbes: Discovering and analyzing the unfoldomes of early-branching eukaryotes

  Molecular BioSystems. 2008;4(4):328-340.
  28

• 76.

  2007

  Vladimir N Uversky; Predrag Radivojac; Lilia M Iakoucheva; Zoran Obradovic; A Keith Dunker

  Prediction of intrinsic disorder and its use in functional proteomics.

  Methods in molecular biology (Clifton, N.J.). 2007;408:69-92.
  13

• 77.

  2007

  Uros Midic; A. Keith Dunker; Zoran Obradovic

  Exploring alternative knowledge representations for protein secondary-structure prediction

  International Journal of Data Mining and Bioinformatics. 2007;1(3):286-313.
  1

• 78.

  2007

  Russ B. Altman; A. Keith Dunker; Lawrence Hunter; Teri E. Klein

  Pacific symposium on biocomputing 2007

  Pacific Symposium on Biocomputing 2007, PSB 2007. 2007:v-vii.
  0

• 79.

  2007

  Slobodan Vucetic; Hongbo Xie; Lilia M. Iakoucheva; Christopher J. Oldfield; A. Keith Dunker; Zoran Obradovic; Vladimir N. Uversky

  Functional anthology of intrinsic disorder. 2. cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions

  Journal of Proteome Research. 2007;6(5):1899-1916.
  85

• 80.

  2007

  Vladimir Vacic; Christopher J. Oldfield; Amrita Mohan; Predrag Radivojac; Marc S. Cortese; Vladimir N. Uversky; A. Keith Dunker

  Characterization of molecular recognition features, MoRFs, and their binding partners

  Journal of Proteome Research. 2007;6(6):2351-2366.
  118

• 81.

  2007

  Vladimir Vacic; Vladimir N. Uversky; A. Keith Dunker; Stefano Lonardi

  Composition Profiler: A tool for discovery and visualization of amino acid composition differences

  BMC Bioinformatics. 2007;8.
  68

• 82.

  2007

  A. Keith Dunker

  Another Window into Disordered Protein Function

  Structure. 2007;15(9):1026-1028.
  7

• 83.

  2007

  Thomas D. Hurley; Jie Yang; Lili Zhang; Kristie D. Goodwin; Qin Zou; Marc Cortese; A. Keith Dunker; Anna A. DePaoli-Roach

  Structural basis for regulation of protein phosphatase 1 by inhibitor-2

  Journal of Biological Chemistry. 2007;282(39):28874-28883.
  63

• 84.

  2007

  Yugong Cheng; Christopher J. Oldfield; Jingwei Meng; Pedro Romero; Vladimir N. Uversky; A. Keith Dunker

  Mining α-helix-forming molecular recognition features with cross species sequence alignments

  Biochemistry. 2007;46(47):13468-13477.
  82

• 85.

  2007

  Wei Li; Vladimir N. Uversky; A. Keith Dunker; Samy O. Meroueh

  A computational investigation of allostery in the catabolite activator protein

  Journal of the American Chemical Society. 2007;129(50):15668-15676.
  31

• 86.

  2007

  A. Keith Dunker; Christopher J. Oldfield; Jingwei Meng; Pedro Romero; Jack Y. Yang; Zoran Obradovic; Vladimir N. Uversky

  Intrinsically disordered proteins: An update

  Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE. 2007:49-58.
  1

• 87.

  2007

  Megan Sickmeier; Justin A. Hamilton; Tanguy LeGall; Vladimir Vacic; Marc S. Cortese; Agnes Tantos; Beata Szabo; Peter Tompa; Jake Chen; Vladimir N. Uversky; et al.

  DisProt: The database of disordered proteins

  Nucleic Acids Research. 2007;35(SUPPL. 1):D786-D793.
  231

• 88.

  2007

  Tanguy Le Gall; Pedro R. Romero; Marc S. Cortese; Vladimir N. Uversky; A. Keith Dunker

  Intrinsic disorder in the protein data bank

  Journal of Biomolecular Structure and Dynamics. 2007;24(4):325-341.
  45

• 89.

  2007

  Hongbo Xie; Slobodan Vucetic; Lilia M. Iakoucheva; Christopher J. Oldfield; A. Keith Dunker; Vladimir N. Uversky; Zoran Obradovic

  Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions

  Journal of Proteome Research. 2007;6(5):1882-1898.
  173

• 90.

  2007

  Hongbo Xie; Slobodan Vucetic; Lilia M. Iakoucheva; Christopher J. Oldfield; A. Keith Dunker; Zoran Obradovic; Vladimir N. Uversky

  Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins

  Journal of Proteome Research. 2007;6(5):1917-1932.
  110

• 91.

  2007

  Predrag Radivojac; Lilia M. Iakoucheva; Christopher J. Oldfield; Zoran Obradovic; Vladimir N. Uversky; A. Keith Dunker

  Intrinsic disorder and functional proteomics

  Biophysical Journal. 2007;92(5):1439-1456.
  258

• 92.

  2007

  A. Keith Dunker; Ariel Fernández

  Engineering productive enzyme confinement

  Trends in Biotechnology. 2007;25(5):189-190.
  14

• 93.

  2006

  Predrag Radivojac; Slobodan Vucetic; Timothy R. O'Connor; Vladimir N. Uversky; Zoran Obradovic; A. Keith Dunker

  Calmodulin signaling: Analysis and prediction of a disorder-dependent molecular recognition

  Proteins: Structure, Function and Genetics. 2006;63(2):398-410.
  48

• 94.

  2006

  Jessica Walton Chen; Pedro Romero; Vladimir N. Uversky; A. Keith Dunker

  Conservation of intrinsic disorder in protein domains and families: II. Functions of conserved disorder

  Journal of Proteome Research. 2006;5(4):888-898.
  46

• 95.

  2006

  Jessica Walton Chen; Pedro Romero; Vladimir N. Uversky; A. Keith Dunker

  Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions

  Journal of Proteome Research. 2006;5(4):879-887.
  43

• 96.

  2006

  Pedro R. Romero; Saima Zaidi; Ya Yin Fang; Vladimir N. Uversky; Predrag Radivojac; Christopher J. Oldfield; Marc S. Cortese; Megan Sickmeier; Tanguy LeGall; Zoran Obradovic; et al.

  Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms

  Proceedings of the National Academy of Sciences of the United States of America. 2006;103(22):8390-8395.
  124

• 97.

  2006

  Jiangang Liu; Narayanan B. Perumal; Christopher J. Oldfield; Eric W. Su; Vladimir N. Uversky; A. Keith Dunker

  Intrinsic disorder in transcription factors

  Biochemistry. 2006;45(22):6873-6888.
  158

• 98.

  2006

  Kang Peng; Predrag Radivojac; Slobodan Vucetic; A. Keith Dunker; Zoran Obradovic

  Length-dependent prediction of protein in intrinsic disorder

  BMC Bioinformatics. 2006;7.
  196

• 99.

  2006

  Vladimir N. Uversky; Ann Roman; Christopher J. Oldfield; A. Keith Dunker

  Protein intrinsic disorder and human papillomaviruses: Increased amount of disorder in E6 and E7 oncoproteins from high risk HPVs

  Journal of Proteome Research. 2006;5(8):1829-1842.
  41

• 100.

  2006

  Yugong Cheng; Tanguy LeGall; Christopher J. Oldfield; James P. Mueller; Ya-Yue J. Van; Pedro Romero; Marc S. Cortese; Vladimir N. Uversky; A. Keith Dunker

  Rational drug design via intrinsically disordered protein

  Trends in Biotechnology. 2006;24(10):435-442.
  90

• 101.

  2006

  Yugong Cheng; Tanguy LeGall; Christopher J. Oldfield; A. Keith Dunker; Vladimir N. Uversky

  Abundance of intrinsic disorder in protein associated with cardiovascular disease

  Biochemistry. 2006;45(35):10448-10460.
  70

• 102.

  2006

  Amrita Mohan; Christopher J. Oldfield; Predrag Radivojac; Vladimir Vacic; Marc S. Cortese; A. Keith Dunker; Vladimir N. Uversky

  Analysis of Molecular Recognition Features (MoRFs)

  Journal of Molecular Biology. 2006;362(5):1043-1059.
  177

• 103.

  2006

  Zsuzsanna Dosztányi; Jake Chen; A. Keith Dunker; István Simon; Peter Tompa

  Disorder and sequence repeats in hub proteins and their implications for network evolution

  Journal of Proteome Research. 2006;5(11):2985-2995.
  108

• 104.

  2006

  Russ B. Altman; A. Keith Dunker; Lawrence Hunter; Teri E. Klein

  Pacific symposium on biocomputing 2006

  Proceedings of the Pacific Symposium on Biocomputing 2006, PSB 2006. 2006:v-vii.
  0

• 105.

  2005

  Russ B. Altman; A. Keith Dunker; Lawrence Hunter; Teri E. Klein

  Pacific symposium on biocomputing 2005

  Proceedings of the Pacific Symposium on Biocomputing 2005, PSB 2005. 2005:v-vii.
  0

• 106.

  2005

  Il Yeong Park; Eun Jung Kim; HaJeung Park; Kelly Fields; A. Keith Dunker; ChulHee Kang

  Interaction between cardiac calsequestrin and drugs with known cardiotoxicity

  Molecular Pharmacology. 2005;67(1):97-104.
  21

• 107.

  2005

  Kang Peng; Slobodan Vucetic; Predrag Radivojac; Celeste J. Brown; A. Keith Dunker; Zoran Obradovic

  Optimizing long intrinsic disorder predictors with protein evolutionary information

  Journal of Bioinformatics and Computational Biology. 2005;3(1):35-60.
  102

• 108.

  2005

  Christopher J. Oldfield; Eldon L. Ulrich; Yugong Cheng; A. Keith Dunker; John L. Markley

  Addressing the intrinsic disorder bottleneck in structural proteomics

  Proteins: Structure, Function and Genetics. 2005;59(3):444-453.
  45

• 109.

  2005

  Slobodan Vucetic; Zoran Obradovic; Vladimir Vacic; Predrag Radivojac; Kang Peng; Lilia M. Iakoucheva; Marc S. Cortese; J. David Lawson; Celeste J. Brown; et al.

  DisProt: A database of protein disorder

  Bioinformatics. 2005;21(1):137-140.
  105

• 110.

  2005

  Christopher J. Oldfield; Yugong Cheng; Marc S. Cortese; Pedro Romero; Vladimir N. Uversky; A. Keith Dunker

  Coupled folding and binding with α-helix-forming molecular recognition elements

  Biochemistry. 2005;44(37):12454-12470.
  202

• 111.

  2005

  Vladimir N. Uversky; Christopher J. Oldfield; A. Keith Dunker

  Showing your ID: Intrinsic disorder as an ID for recognition, regulation and cell signaling

  Journal of Molecular Recognition. 2005;18(5):343-384.
  305

• 112.

  2005

  Marc S. Cortese; Jason P. Baird; Vladimir N. Uversky; A. Keith Dunker

  Uncovering the unfoldome: Enriching cell extracts for unstructured proteins by acid treatment

  Journal of Proteome Research. 2005;4(5):1610-1618.
  29

• 113.

  2005

  A. Keith Dunker; Marc S. Cortese; Pedro Romero; Lilia M. Iakoucheva; Vladimir N. Uversky

  Flexible nets: The roles of intrinsic disorder in protein interaction networks

  FEBS Journal. 2005;272(20):5129-5148.
  393

• 114.

  2005

  Zoran Obradovic; Kang Peng; Slobodan Vucetic; Predrag Radivojac; A. Keith Dunker

  Exploiting heterogeneous sequence properties improves prediction of protein disorder

  Proteins: Structure, Function and Genetics. 2005;61(SUPPL. 7):176-182.
  152

• 115.

  2005

  Kenneth M. Daily; Predrag Radivojac; A. Keith Dunker

  Intrinsic disorder and prote in modifications: Building an SVM predictor for methylation

  Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB '05. 2005;2005.
  0

• 116.

  2005

  Uros Midic; A. Keith Dunker; Zoran Obradovic

  Improving protein secondary-structure prediction by predicting ends of secondary-structure segments

  Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB '05. 2005;2005.
  2

• 117.

  2004

  Pedro Romero; Zoran Obradovic; A. Keith Dunker

  Natively disordered proteins: Functions and predictions

  Applied Bioinformatics. 2004;3(2-3):105-113.
  86

• 118.

  2004

  Predrag Radivojac; Zoran Obradovic; A. Keith Dunker; Slobodan Vucetic

  Feature selection filters based on the permutation test

  Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science). 2004;3201:334-346.
  2

• 119.

  2004

  Predrag Radivojac; Zoran Obradovic; David K. Smith; Guang Zhu; Slobodan Vucetic; Celeste J. Brown; J. David Lawson; A. Keith Dunker

  Protein flexibility and intrinsic disorder

  Protein Science. 2004;13(1):71-80.
  131

• 120.

  2004

  Jean-Marie Bourhis; Kenth Johansson; Véronique Receveur-Bréchot; Christopher J. Oldfield; Keith A. Dunker; Bruno Canard; Sonia Longhi

  The C-terminal domain of measles virus nucleoprotein belongs to the class of intrinsically disordered proteins that fold upon binding to their physiological partner

  Virus Research. 2004;99(2):157-167.
  80

• 121.

  2004

  HaJeung Park; Yeong Il Park; EunJung Kim; Buhyun Youn; Kelly Fields; A. Keith Dunker; ChulHee Kang

  Comparing skeletal and cardiac calsequestrin structures and their calcium binding: A proposed mechanism for coupled calcium binding and protein polymerization

  Journal of Biological Chemistry. 2004;279(17):18026-18033.
  68

• 122.

  2004

  Lilia M. Iakoucheva; Predrag Radivojac; Celeste J. Brown; Timothy R. O'Connor; Jason G. Sikes; Zoran Obradovic; A. Keith Dunker

  The importance of intrinsic disorder for protein phosphorylation

  Nucleic Acids Research. 2004;32(3):1037-1049.
  418

• 123.

  2004

  Clay Bracken; Lilia M Iakoucheva; Pedro R Romero; A Keith Dunker

  Combining prediction, computation and experiment for the characterization of protein disorder

  Current Opinion in Structural Biology. 2004;14(5):570-576.
  79

• 124.

  2004

  Predrag Radivojac; Nitesh V. Chawla; A. Keith Dunker; Zoran Obradovic

  Classification and knowledge discovery in protein databases

  Journal of Biomedical Informatics. 2004;37(4):224-239.
  31

• 125.

  2003

  Slobodan Vucetic; Celeste J. Brown; A. Keith Dunker; Zoran Obradovic

  Flavors of protein disorder

  Proteins: Structure, Function and Genetics. 2003;52(4):573-584.
  187

• 126.

  2003

  Radivojac, Predrag; Obradovic, Zoran; Brown, Celeste J; Dunker, A Keith

  Prediction of boundaries between intrinsically ordered and disordered protein regions.

  Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2003:216-227.
  27

• 127.

  2003

  J. Yang; J.R. Powers; S. Clark; A.K. Dunker; B.G. Swanson

  Ligand and flavor binding functional properties of β-lactoglobulin in the molten globule state induced by high pressure

  Journal of Food Science. 2003;68(2):444-452.
  14

• 128.

  2003

  HaJeung Park; Si Wu; A. Keith Dunker; ChulHee Kang

  Erratum: Polymerization of calsequestrin. Implications for Ca²⁺ regulation (The Journal of Biological Chemistry (2003) 278 (16176-16182))

  Journal of Biological Chemistry. 2003;278(43):42728.
  0

• 129.

  2003

  Jeong S. Oh; Douglas R. Davies; J. David Lawson; Gregory E. Arnold; A. Keith Dunker

  Erratum: Isolation of chloroform-resistant mutants of filamentous phage: Localization in models of phage structure (Journal of Molecular Biology (1999) 287 (449-457))

  Journal of Molecular Biology. 2003;334(1):173-174.
  0

• 130.

  2003

  Zoran Obradovic; Kang Peng; Slobodan Vucetic; Predrag Radivojac; Celeste J. Brown; A. Keith Dunker

  Predicting Intrinsic Disorder From Amino Acid Sequence

  Proteins: Structure, Function and Genetics. 2003;53(SUPPL. 6):566-572.
  165

• 131.

  2003

  Lilia M. Iakoucheva; A. Keith Dunker

  Order, disorder, and flexibility: Prediction from protein sequence

  Structure. 2003;11(11):1316-1317.
  26

• 132.

  2003

  Alyssa C. Biorn; Valerie Daggett; William F. DeGrado; A. Keith Dunker; Sheena E. Radford; Daniel P. Raleigh; Michael Rosenblatt; Jeffrey Urbauer; A. Joshua Wand

  Protein function, folding, and dynamics in the proteinomic era

  Protein Science. 2003;12(2):389-397.
  0

• 133.

  2003

  David K. Smith; Predrag Radivojac; Zoran Obradovic; A. Keith Dunker; Guang Zhu

  Improved amino acid flexibility parameters

  Protein Science. 2003;12(5):1060-1072.
  72

• 134.

  2003

  HaJeung Park; Si Wu; A. Keith Dunker; ChulHee Kang

  Polymerization of calsequestrin: Implications for Ca²⁺ regulation

  Journal of Biological Chemistry. 2003;278(18):16176-16182.
  52

• 135.

  2002

  Celeste J. Brown; Sachiko Takayama; Andrew M. Campen; Pam Vise; Thomas W. Marshall; Christopher J. Oldfield; Christopher J. Williams; A. Keith Dunker

  Evolutionary rate heterogeneity in proteins with long disordered regions

  Journal of Molecular Evolution. 2002;55(1):104-110.
  162

• 136.

  2002

  Timothy R. O'Connor; J. David Lawson; A. Keith Dunker

  The benefit of intrinsic disorder information in neural network prediction of calmodulin binding targets

  Proceedings of the International Joint Conference on Neural Networks. 2002;1:296-299.
  0

• 137.

  2002

  Keith Dunker

  The protein trinity: Importance of intrinsic disorder for protein function

  Human Genome News. 2002;12(1):13-14.
  2

• 138.

  2002

  ChulHee Kang; William R Trumble; A Keith Dunker

  Crystallization and structure-function of calsequestrin.

  Methods in molecular biology (Clifton, N.J.). 2002;172:281-294.
  2

• 139.

  2002

  Predrag Radivojac; Zoran Obradovic; Celeste J Brown; A Keith Dunker

  Improving sequence alignments for intrinsically disordered proteins.

  Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2002:589-600.
  11

• 140.

  2002

  A. Keith Dunker; Celeste J. Brown; Zoran Obradovic

  Identification and functions of usefully disordered proteins

  Advances in Protein Chemistry. 2002;62:25-49.
  167

• 141.

  2002

  Lilia M. Iakoucheva; Celeste J. Brown; J.David Lawson; Zoran Obradović; A.Keith Dunker

  Intrinsic disorder in cell-signaling and cancer-associated proteins

  Journal of Molecular Biology. 2002;323(3):573-584.
  415

• 142.

  2002

  A. Keith Dunker; Celeste J. Brown; J. David Lawson; Lilia M. Iakoucheva; Zoran Obradović

  Intrinsic disorder and protein function

  Biochemistry. 2002;41(21):6573-6582.
  774

• 143.

  2002

  Jian Yang; Joseph R. Powers; Stephanie Clark; A. Keith Dunker; Barry G. Swanson

  Hydrophobic probe binding of β-lactoglobulin in the native and molten globule state induced by high pressure as affected by pH, KIO₃ and N-ethylmaleimide

  Journal of Agricultural and Food Chemistry. 2002;50(18):5207-5214.
  16

• 144.

  2001

  Jian Yang; A. Keith Dunker; Joseph R. Powers; Stephanie Clark; Barry G. Swanson

  β-Lactoglobulin molten globule induced by high pressure

  Journal of Agricultural and Food Chemistry. 2001;49(7):3236-3243.
  46

• 145.

  2001

  S. Vucetic; P. Radivojac; Z. Obradovic; C.J. Brown; A.K. Dunker

  Methods for improving protein disorder prediction

  Proceedings of the International Joint Conference on Neural Networks. 2001;4:2718-2723.
  12

• 146.

  2001

  A. Keith Dunker; Zoran Obradovic

  The protein trinity - Linking function and disorder

  Nature Biotechnology. 2001;19(9):805-806.
  273

• 147.

  2001

  Celeste J. Brown; Ethan C. Garner; A. Keith Dunker; Paul Joyce

  The power to detect recombination using the coalescent [3]

  Molecular Biology and Evolution. 2001;18(7):1421-1424.
  20

• 148.

  2001

  Lilia M. Iakoucheva; Amy L. Kimzey; Christophe D. Masselon; Richard D. Smith; A. Keith Dunker; Eric J. Ackerman

  Aberrant mobility phenomena of the DNA repair protein XPA

  Protein Science. 2001;10(7):1353-1362.
  61

• 149.

  2001

  A. Keith Dunker; J.David Lawson; Celeste J Brown; Ryan M Williams; Pedro Romero; Jeong S Oh; Christopher J Oldfield; Andrew M Campen; Catherine M Ratliff; Kerry W Hipps; et al.

  Intrinsically disordered protein

  Journal of Molecular Graphics and Modelling. 2001;19(1):26-59.
  754

• 150.

  2001

  Lilia M. Iakoucheva; Amy L. Kimzey; Christophe D. Masselon; James E. Bruce; Ethan C. Garner; Celeste J. Brown; A. Keith Dunker; Richard D. Smith; Eric J. Ackerman

  Identification of intrinsic order and disorder in the DNA repair protein XPA

  Protein Science. 2001;10(3):560-571.
  52

• 151.

  2001

  Pedro Romero; Zoran Obradovic; Xiaohong Li; Ethan C. Garner; Celeste J. Brown; A. Keith Dunker

  Sequence complexity of disordered protein

  Proteins: Structure, Function and Genetics. 2001;42(1):38-48.
  525

• 152.

  2001

  R.M. Williams; Z. Obradovi; V. Mathura; W. Braun; E.C. Garner; J. Young; S. Takayama; C.J. Brown; A.K. Dunker

  The protein non-folding problem: amino acid determinants of intrinsic order and disorder.

  Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2001:89-100.
  58

• 153.

  2001

  R.W. Bailey; A.K. Dunker; C.J. Brown; E.C. Garner; M.D. Griswold

  Clusterin, a binding protein with a molten globule-like region

  Biochemistry. 2001;40(39):11828-11840.
  49

• 154.

  2000

  Virginie N. Guyon; James D. Astwood; Ethan C. Garner; A. Keith Dunker; Loverine P. Taylor

  Isolation and characterization of cDNAs expressed in the early stages of flavonol-induced pollen germination in petunia

  Plant Physiology. 2000;123(2):699-710.
  45

• 155.

  2000

  Pedro Romero; Zoran Obradovic; A. Keith Dunker

  Intelligent data analysis for protein disorder prediction

  Artificial Intelligence Review. 2000;14(6):447-484.
  24

• 156.

  2000

  A.K. Dunker; Z. Obradovic; P. Romero; E.C. Garner; C.J. Brown

  Intrinsic protein disorder in complete genomes.

  Genome informatics series : proceedings of the . Workshop on Genome Informatics. Workshop on Genome Informatics. 2000;11:161-171.
  229

• 157.

  2000

  X. Li; Z. Obradovic; C.J. Brown; E.C. Garner; A.K. Dunker

  Comparing predictors of disordered protein.

  Genome informatics series : proceedings of the . Workshop on Genome Informatics. Workshop on Genome Informatics. 2000;11:172-184.
  25

• 158.

  1999

  Pedro Romero; Zoran Obradovic; A.K. Dunker

  Folding minimal sequences: The lower bound for sequence complexity of globular proteins

  FEBS Letters. 1999;462(3):363-367.
  47

• 159.

  1999

  Jeong S. Oh; Douglas R. Davies; J. David Lawson; Gregory E. Arnold; A. Keith Dunker

  Isolation of chloroform-resistant mutants of filamentous phage: Localization in models of phage structure

  Journal of Molecular Biology. 1999;287(3):449-457.
  8

• 160.

  1998

  A.K. Dunker; E. Garner; S. Guilliot; P. Romero; K. Albrecht; J. Hart; Z. Obradovic; C. Kissinger; J.E. Villafranca

  Protein disorder and the evolution of molecular recognition: theory, predictions and observations.

  Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 1998:473-484.
  122

• 161.

  1998

  P. Romero; Z. Obradovic; C.R. Kissinger; J.E. Villafranca; E. Garner; S. Guilliot; A.K. Dunker

  Thousands of proteins likely to have long disordered regions.

  Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 1998:437-448.
  105

• 162.

  1998

  Shuren Wang; William R. Trumble; Hong Liao; Carla R. Wesson; A. Keith Dunker; ChulHee Kang

  Crystal structure of calsequestrin from rabbit skeletal muscle sarcoplasmic reticulum

  Nature Structural Biology. 1998;5(6):476-483.
  140

• 163.

  1998

  Xiaolong Ji; Jeong Oh; A. Keith Dunker; K.W. Hipps

  Effects of relative humidity and applied force on atomic force microscopy images of the filamentous phage fd

  Ultramicroscopy. 1998;72(3-4):165-176.
  18

• 164.

  1997

  P. Romero; Z. Obradovi; C. Kissinger; J.E. Villafranca; A.K. Dunker

  Identifying disordered regions in proteins from amino acid sequence

  IEEE International Conference on Neural Networks - Conference Proceedings. 1997;1:90-95.
  126

• 165.

  1996

  S.J. Johns; S.M. Thompson; A.K. Dunker

  An introductory course in computation molecular biology: rationale, history, observations, and course description.

  Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 1996:396-407.
  0

• 166.

  1996

  K. Albrecht; J. Hart; A. Shaw; A.K. Dunker

  Quaternion contact ribbons: a new tool for visualizing intra- and intermolecular interactions in proteins.

  Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 1996:41-52.
  2

• 167.

  1996

  Embola E. Ndi; B.G. Swanson; A.K. Dunker; L.O. Luedecke

  Relation of β-lactoglobulin - Sodium polypectate aggregation to bulk macromolecular concentration

  Journal of Food Science. 1996;61(1):69-73.
  4

• 168.

  1995

  R.T. Miller; R.J. Douthart; A.K. Dunker

  Identifying repeated structural elements in folded proteins

  Proceedings of the Hawaii International Conference on System Sciences. 1995;5:235-244.
  0

• 169.

  1995

  A.Keith Dunker; Richard H. Lathrop

  Protein structure prediction. Introduction to session

  Proceedings of the Hawaii International Conference on System Sciences. 1995;5:295.
  0

• 170.

  1994

  P.R. Austin; P.E. Jablonski; G.A. Bohach; A.K. Dunker; C.J. Hovde

  Evidence that the A₂ fragment of Shiga-like toxin type I is required for holotoxin integrity

  Infection and Immunity. 1994;62(5):1768-1775.
  8

• 171.

  1994

  A.K. Dunker

  P22 phage capsids under pressure.

  Biophysical Journal. 1994;66(5):1269-1271.
  1

• 172.

  1993

  Y.L. Lyubchenko; P.I. Oden; D. Lampner; S.M. Lindsay; K.A. Dunker

  Atomic force microscopy of DNA and bacteriophage in air, water and propanol: The role of adhesion forces

  Nucleic Acids Research. 1993;21(5):1117-1123.
  102

• 173.

  1993

  Zhaoping He; A. Keith Dunker; Carla R. Wesson; William R. Trumble

  Ca²⁺-induced folding and aggregation of skeletal muscle sarcoplasmic reticulum calsequestrin: The involvement of the trifluoperazine-binding site

  Journal of Biological Chemistry. 1993;268(33):24635-24641.
  42

• 174.

  1993

  L.M. Roberts; A.K. Dunker

  Structural changes accompanying chloroform-induced contraction of the filamentous phage fd

  Biochemistry. 1993;32(39):10479-10488.
  18

• 175.

  1992

  G.E. Arnold; A.K. Dunker; S.J. Johns; R.J. Douthart

  Use of conditional probabilities for determining relationships between amino acid sequence and protein secondary structure

  Proteins: Structure, Function and Genetics. 1992;12(4):382-399.
  9

• 176.

  1992

  G.E. Arnold; L.A. Day; A.K. Dunker

  Tryptophan contributions to the unusual circular dichroism of fd bacteriophage

  Biochemistry. 1992;31(34):7948-7956.
  42

• 177.

  1991

  A.K. Dunker; L.D. Ensign; G.E. Arnold; L.M. Roberts

  Proposed molten globule intermediates in fd phage penetration and assembly

  FEBS Letters. 1991;292(1-2):275-278.
  14

• 178.

  1991

  A.K. Dunker; L.D. Ensign; G.E. Arnold; L.M. Roberts

  A model for fd phage penetration and assembly

  FEBS Letters. 1991;292(1-2):271-274.
  14

• 179.

  1987

  P.S. Brady; A.K. Dunker; L.J. Brady

  Characterization of hepatic carnitine palmitoyltransferase. Use of bromoacyl derivatives and antibodies

  Biochemical Journal. 1987;241(3):751-757.
  2

• 180.

  1987

  Jun-Ling Huang; Traci B. Topping; Zhaoping He; Brian Folsom; A.Keith Dunker

  Trypsin-induced calcium efflux from sarcoplasmic reticulum: Evidence for the involvement of the (Ca²⁺+Mg²⁺)-ATPase

  The Journal of Membrane Biology. 1987;100(1):193-205.
  0

• 181.

  1987

  Gregory E. Arnold; A.Keith Dunker; Michael J. Smerdon

  Limited nucleosome migration can completely randomize DNA repair patches in intact human cells

  Journal of Molecular Biology. 1987;196(2):433-436.
  0

• 182.

  1987

  Kurt W. Short; B.A. Wallace; Richard A. Myers; Stephen P. A. Fodor; A. Keith Dunker

  Comparison of lipid/gramicidin dispersions and cocrystals by Raman scattering

  Biochemistry. 1987;26(2):557-562.
  4

• 183.

  1987

  William E. Artz; Paul D. Bishop; A. Keith Dunker; Edward G. Schanus; Barry G. Swanson

  Interaction of synthetic proanthocyanidin dimer and trimer with bovine serum albumin and purified bean globulin fraction G-1

  Journal of Agricultural and Food Chemistry. 1987;35(3):417-421.
  37

• 184.

  1984

  Robert W. Williams; A.Keith Dunker; Warner L. Peticolas

  Raman spectroscopy and deuterium exchange of the filamentous phage fd

  Biochimica et Biophysica Acta (BBA)/Protein Structure and Molecular. 1984;791(2):131-144.
  10

• 185.

  1983

  K.C. Toogood; B. Folsom; T. Topping; H. McCutchan; M.J. Dolejsi; S. Johns; G. Stuart; A.K. Dunker

  Evidence that trypsin digestion exposes a channel in the sarcoplasmic reticulum membrane.

  Membrane Biochemistry. 1983;5(1):49-75.
  0

• 186.

  1982

  A.Keith Dunker

  A proton motive force transducer and its role in proton pumps, proton engines, tobacco mosaic virus assembly and hemoglobin allosterism

  Journal of Theoretical Biology. 1982;97(1):95-127.
  5

• 187.

  1981

  K.C. Toogood; M.K.T. Dolejsi; H.J. McCutchan; A.K. Dunker

  Trypsin-stimulated leakage and calcium transinhibition in sarcoplasmic reticulum

  Biophysical Journal. 1981;33(2 II):T-PM-Po2.
  0

• 188.

  1981

  A.K. Dunker

  Comments on filamentous phage assembly.

  Progress in clinical and biological research. 1981;64:383-388.
  0

• 189.

  1981

  Y.C. Ng; A.K. Dunker

  Effects of metabolic inhibitors on the assembly of fd phage.

  Progress in clinical and biological research. 1981;64:467-474.
  0

• 190.

  1981

  S.P. Fodor; A.K. Dunker; Y.C. Ng; D. Carsten; R.W. Williams

  Lipid-tail group dependent structure of the fd gene 8 protein.

  Progress in clinical and biological research. 1981;64:441-455.
  1

• 191.

  1981

  Robert W. Williams; A.Keith Dunker

  Determination of the secondary structure of proteins from the amide I band of the laser Raman spectrum

  Journal of Molecular Biology. 1981;152(4):783-813.
  45

• 192.

  1980

  Neal Burres; A. Keith Dunker

  Membrane transport through α-heltical bundles. IV. Preliminary model building investigation of helix-helix interactions

  Journal of Theoretical Biology. 1980;87(4):723-736.
  0

• 193.

  1980

  Robert W. Williams; Terry Cutrera; A.Keith Dunker; Warner L. Peticolas

  The estimation of protein secondary structure by laser raman spectroscopy from the amide III′ intensity distribution

  FEBS Letters. 1980;115(2):306-308.
  5

• 194.

  1979

  A.K. Dunker

  The structure of picornaviruses: classification of the bonding networks

  Virology. 1979;97(1):141-150.
  0

• 195.

  1979

  A.Keith Dunker; Robert W. Williams; Bruce P. Gaber; Warner L. Peticolas

  Laser raman studies of lipid disordering by the B-protein of fd phage

  BBA - Biomembranes. 1979;553(2):351-357.
  1

• 196.

  1979

  A.K. Dunker; R.W. Williams; W.L. Peticolas

  Ultraviolet and laser Raman investigation of the buried tyrosines in fd phage.

  Journal of Biological Chemistry. 1979;254(14):6444-6448.
  2

• 197.

  1978

  A. Keith Dunker; D.A. Marvin

  A model for membrane transport through α-helical protein pores

  Journal of Theoretical Biology. 1978;72(1):9-16.
  6

• 198.

  1978

  A.K. Dunker; T.C. Jones

  Proposed knobs-into-holes packing for several membrane proteins.

  Membrane Biochemistry. 1978;2(1):1-16.
  4

• 199.

  1977

  A. Keith Dunker; D.J. Zaleske

  Stereochemical considerations for constructing α helical protein bundles with particular application to membrane proteins

  BIOCHEM.J. 1977;163(1):45-57.
  0

• 200.

  1977

  R.W. Williams; A.K. Dunker

  Circular dichroism studies of fd coat protein in membrane vesicles

  Journal of Biological Chemistry. 1977;252(18):6253-6255.
  6

• 201.

  1976

  A.K. Dunker; A.J. Kenyon

  Mobility of sodium dodecyl sulphate: protein complexes

  Biochemical Journal. 1976;153(2):191-197.
  9

• 202.

  1975

  A.K. Dunker

  Analysis of protein nucleic acid filter binding using the Poisson distribution: a method to estimate cooperativity

  FEBS Letters. 1975;52(2):323-326.
  0

• 203.

  1975

  Ji Won Yoon; A.K. Dunker; A.J. Kenyon

  Characterization of Aleutian mink disease virus

  Virology. 1975;64(2):575-580.
  1

• 204.

  1975

  A.K. Dunker; W. Paranchych

  On the structure of R17 phage

  Virology. 1975;67(1):297-299.
  0

• 205.

  1975

  A.K. Dunker; E.A. Anderson

  The binding of the fd gene-5 protein to single-stranded nucleic acid

  BBA Section Nucleic Acids And Protein Synthesis. 1975;402(1):31-34.
  0

• 206.

  1974

  Y. Nakashima; A.K. Dunker; D.A. Marvin; W. Konigsberg

  The amino acid sequence of a DNA binding protein, the gene 5 product of fd filamentous bacteriophage

  FEBS Letters. 1974;40(2):290-292.
  0

• 207.

  1974

  A.K. Dunker

  Structure of isometric viruses containing nonidentical polypeptide chains

  Journal of Virology. 1974;14(4):878-885.
  0

• 208.

  1974

  A.K. Dunker; R.D. Klausner; D.A. Marvin; R.L. Wlseman

  Filamentous bacterial viruses. X. X-ray diffraction studies of the R4 A-protein mutant

  Journal of Molecular Biology. 1974;82(1):115-116,IN7-IN8,117.
  2

• 209.

  1972

  R.L. Wiseman; A.K. Dunker; D.A. Marvin

  Filamentous bacterial viruses. III. Physical and chemical characterization of the If1 virion

  Virology. 1972;48(1):230-244.
  2

• 210.

  1971

  A.Keith Dunker; Roland R. Rueckert

  Fragments generated by pH dissociation of ME-virus and their relation to the structure of the virion

  Journal of Molecular Biology. 1971;58(1):217-230,IN7-IN8,231-235.
  1

• 211.

  1969

  R.R. Rueckert; A.K. Dunker; C.M. Stoltzfus

  The structure of mouse-Elberfeld virus: a model.

  Proceedings of the National Academy of Sciences of the United States of America. 1969;62(3):912-919.
  1

• 212.

  1969

  A.K. Dunker; R.R. Rueckert

  Observations on molecular weight determinations on polyacrylamide gel.

  Journal of Biological Chemistry. 1969;244(18):5074-5080.
  31