Grant Detail
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Genomic Convergence in Alzheimer Disease
1 April 2008 - 31 March 2013
NATIONAL INSTITUTE ON AGING
Total Funding: $ 5,843,348
DESCRIPTION (provided by applicant): In the past, the field of Alzheimer disease (AD) genetics has benefited from the development of innovative paradigms that incorporate the latest genomic technologies combined with pristine patient data to dissect its complex etiology. Our group has successfully used this paradigm in both the identification of the APOE risk effect and more recently the glutathione S-transferase Omega-1 (GSTO1) age at onset (AAO) effect in AD. There is a new appreciation of the power of incorporating clinical phenotypes and developing clinical subphenotypes in attacking complex disorders. In addition, molecular genetic methods have continued to advance rapidly. Whole genome association (WGA) is a new approach that allows the direct evaluation of 300,000- 1,000,000 SNPs from across the genome for association with AD and provides the opportunity to perform a much more detailed examination of the genome than linkage studies. However, while the information content of WGA is extraordinarily high, the initial false positive rate using standard analyses is also high. Investigating each of the thousands of markers that will reach nominal significance is an ominous and inefficient task. One solution to this problem is the genomic convergence approach, which integrates disparate data types to sift through the volumes of existing data to prioritize the best candidate genes for intensive analysis. We have already demonstrated the utility of this approach with the identification of the GSTO1 gene. Thus we are proposing a WGA study of AD and will filter the results using existing linkage, candidate gene, and our recently generated microarray and Serial Analysis of Gene Expression (SAGE) data. A small set of candidate genes identified in multiple of these studies will be the focus of intensive follow-up analysis. Of particular importance will be our ability to follow-up using detailed clinical data on movement and psychiatric symptoms in a newly collected case-control dataset. Our unique position will enable us to marry the most powerful of new genomic approaches, WGA, to existing information to elucidate additional genetic effects contributing to this important neurodegenerative disease. The knowledge derived from this study will further our understanding of AD and will be crucial for future studies to develop and evaluate interventions. The knowledge derived from this study will further our understanding of the genetic etiology of AD. This understanding will be crucial for future studies to develop early interventions and more focused treatments, which will help alleviate the suffering of those with the disease and their families.
15 Resulting Publications
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1.
2013Martin A Kohli; Krista John-Williams; Ruchita Rajbhandary; Adam Naj; Patrice Whitehead; Kara Hamilton; Regina M Carney; Clinton Wright; Elizabeth Crocco; Harry E Gwirtzman; et al.
Repeat expansions in the C9ORF72 gene contribute to Alzheimer's disease in Caucasians.
Neurobiology of aging 2013;34(5):1519.e5-12. -
2.
2013Patrick Holton; Mina Ryten; Michael Nalls; Daniah Trabzuni; Michael E Weale; Dena Hernandez; Helen Crehan; J Raphael Gibbs; Richard Mayeux; Jonathan L Haines; et al.
Initial assessment of the pathogenic mechanisms of the recently identified Alzheimer risk Loci.
Annals of human genetics 2013;77(2):85-105. -
3.
2012Nathalie C Schnetz-Boutaud; Joshua Hoffman; Jared E Coe; Deborah G Murdock; Margaret A Pericak-Vance; Jonathan L Haines
Annals of human genetics 2012;76(6):448-53. -
4.
2012Gyungah Jun; Badri N Vardarajan; Jacqueline Buros; Chang-En Yu; Michele V Hawk; Beth A Dombroski; Paul K Crane; Eric B Larson; ; Richard Mayeux; et al.
Comprehensive search for Alzheimer disease susceptibility loci in the APOE region.
Archives of neurology 2012;69(10):1270-9. -
5.
2012Fanggeng Zou; High Seng Chai; Curtis S Younkin; Mariet Allen; Julia Crook; V Shane Pankratz; Minerva M Carrasquillo; Christopher N Rowley; Asha A Nair; Sumit Middha; et al.
Brain expression genome-wide association study (eGWAS) identifies human disease-associated variants.
PLoS genetics 2012;8(6):e1002707. -
6.
2011Adam C Naj; Gyungah Jun; Gary W Beecham; Li-San Wang; Badri Narayan Vardarajan; Jacqueline Buros; Paul J Gallins; Joseph D Buxbaum; Gail P Jarvik; Paul K Crane; et al.
Nature genetics 2011;43(5):436-41. -
7.
2011Christiane Reitz; Shinya Tokuhiro; Lorraine N Clark; Christopher Conrad; Jean-Paul Vonsattel; Lili-Naz Hazrati; András Palotás; Raphael Lantigua; Martin Medrano; Ivonne Z Jiménez-Velázquez; et al.
Annals of neurology 2011;69(1):47-64. -
8.
2010Gary W Beecham; Adam C Naj; John R Gilbert; Jonathan L Haines; Joseph D Buxbaum; Margaret A Pericak-Vance
PCDH11X variation is not associated with late-onset Alzheimer disease susceptibility.
Psychiatric genetics 2010;20(6):321-4. -
9.
2010Gyungah Jun; Adam C Naj; Gary W Beecham; Li-San Wang; Jacqueline Buros; Paul J Gallins; Joseph D Buxbaum; Nilufer Ertekin-Taner; M Daniele Fallin; Robert Friedland; et al.
Archives of neurology 2010;67(12):1473-84. -
10.
2010Adam C Naj; Gary W Beecham; Eden R Martin; Paul J Gallins; Eric H Powell; Ioanna Konidari; Patrice L Whitehead; Guiqing Cai; Vahram Haroutunian; William K Scott; et al.
PLoS genetics 2010;6(9):. -
11.
2009Todd L Edwards; Margaret Pericak-Vance; Johnny R Gilbert; Jonathan L Haines; Eden R Martin; Marylyn D Ritchie
American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2009;150B(5):721-35. -
12.
2009Gary W Beecham; Nathalie Schnetz-Boutaud; Jonathan L Haines; Margaret A Pericak-Vance
CALHM1 polymorphism is not associated with late-onset Alzheimer disease.
Annals of human genetics 2009;73(Pt 3):379-81. -
13.
2009Gary W Beecham; Eden R Martin; Yi-Ju Li; Michael A Slifer; John R Gilbert; Jonathan L Haines; Margaret A Pericak-Vance
American journal of human genetics 2009;84(1):35-43. -
14.
2008S Züchner; J R Gilbert; E R Martin; C R Leon-Guerrero; P-T Xu; C Browning; P G Bronson; P Whitehead; D E Schmechel; J L Haines; et al.
Linkage and association study of late-onset Alzheimer disease families linked to 9p21.3.
Annals of human genetics 2008;72(Pt 6):725-31. -
15.
2008R M Carney; M A Slifer; P I Lin; P C Gaskell; W K Scott; C F Potocky; C M Hulette; K A Welsh-Bohmer; D E Schmechel; J M Vance; et al.
Longitudinal follow-up of late-onset Alzheimer disease families.
American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2008;147B(5):571-8.
Scientific Context
This section shows information that has been computed by using the fingerprint of the grant, including related publications, related experts and related grants - all with fingerprints representing significant amounts of overlap between their fingerprint and this grant. The red dots indicate whether those experts or terms actually appear within this grant, showing potential and actual connections.
Related Grants
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1.
TANZI, RUDOLPH EMILE
Identification of Functional Genomic Variants in Alzheimer's Disease
1 May 1999 - 30 April 2018
NATIONAL INSTITUTE OF MENTAL HEALTH
Total Funding: $ 3,474,948
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2.
PERICAK-VANCE, MARGARET A
Molecular and Genetic Epidemiology of Autism
24 August 2007 - 30 April 2012
NATIONAL INSTITUTE OF MENTAL HEALTH
Total Funding: $ 5,860,465
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3.
TANZI, RUDOLPH EMILE
Identification and Characterization of Novel AD Genes
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NATIONAL INSTITUTE OF MENTAL HEALTH
Total Funding: $ 6,796,019
Related Publications
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1.
2005Ayla Ozturk; Purnima P Desai; Ryan L Minster; Steven T Dekosky; M Ilyas Kamboh
Neurobiology of aging 2005;26(8):1161-5. -
2.
1997D Blacker; J L Haines; L Rodes; H Terwedow; R C Go; L E Harrell; R T Perry; S S Bassett; G Chase; D Meyers; et al.
ApoE-4 and age at onset of Alzheimer's disease: the NIMH genetics initiative.
Neurology 1997;48(1):139-47. -
3.
2000J S Collins; R T Perry; B Watson; L E Harrell; R T Acton; D Blacker; M S Albert; R E Tanzi; S S Bassett; M G McInnis; et al.
American journal of medical genetics 2000;96(6):823-30.
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Single Nucleotide Polymorphi...
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