Fernando P Villena

UNCCH, School of Medicine, Genetics

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Fernando P Villena

• Organizations
  University of North Carolina at Chapel Hill
  
  School of Medicine
  
  Genetics
  
  

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This is a list of publications by this researcher, listed chronologically starting with the most recent first. New publications appear in this list weekly. The source of publications and 'cited by' data for this application is Scopus.

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• 1.

  2013

  Hong Xiao; Dominic Ciavatta; David L. Aylor; Peiqi Hu; Fernando Pardo-Manuel De Villena; Ronald J. Falk; J. Charles Jennette

  Genetically determined severity of anti-myeloperoxidase glomerulonephritis

  American Journal of Pathology. 2013;182(4):1219-1226.
  2

• 2.

  2013

  John P. Didion; Fernando Pardo-Manuel De Villena

  Deconstructing Mus gemischus: Advances in understanding ancestry, structure, and variation in the genome of the laboratory mouse

  Mammalian Genome. 2013;24(1-2):1-20.
  0

• 3.

  2012

  John D. Calaway; José Ignacio Domínguez; Megan E. Hanson; Ezequiel C. Cambranis; Fernando Pardo-Manuel de Villena; Elena de la Casa-Esperon

  Intronic Parent-of-Origin Dependent Differential Methylation at the Actn1 Gene Is Conserved in Rodents but Is Not Associated with Imprinted Expression

  PLoS ONE. 2012;7(11).
  0

• 4.

  2012

  Catherine E. Welsh; Darla R. Miller; Kenneth F. Manly; Jeremy Wang; Leonard McMillan; Grant Morahan; Richard Mott; Fuad A. Iraqi; David W. Threadgill; Fernando Pardo-Manuel De Villena

  Status and access to the Collaborative Cross population

  Mammalian Genome. 2012;23(9-10):706-712.
  3

• 5.

  2012

  James J. Crowley; Yunjung Kim; Jin Peng Szatkiewicz; Amanda L. Pratt; Corey R. Quackenbush; Daniel E. Adkins; Edwin Van Den Oord; Molly A. Bogue; Hyuna Yang; Wei Wang; et al.

  Genome-wide association mapping of loci for antipsychotic-induced extrapyramidal symptoms in mice

  Mammalian Genome. 2012;23(5-6):322-335.
  2

• 6.

  2012

  Jeremy R. Wang; Fernando Pardo-Manuel de Villena; Leonard McMillan

  Comparative analysis and visualization of multiple collinear genomes

  BMC Bioinformatics. 2012;13(SUPPL.3).
  1

• 7.

  2012

  Jeremy R. Wang; Fernando Pardo-Manuel de Villena; Heather A. Lawson; James M. Cheverud; Gary A. Churchill; Leonard McMillan

  Imputation of single-nucleotide polymorphisms in inbred mice using local phylogeny

  Genetics. 2012;190(2):449-458.
  4

• 8.

  2012

  John P. Didion; Hyuna Yang; Keith Sheppard; Chen-Ping Fu; Leonard McMillan; Fernando P.-M. De Villena; Gary A. Churchill

  Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias

  BMC Genomics. 2012;13(1).
  4

• 9.

  2012

  Chen-Ping Fu; Catherine E. Welsh; Fernando Pardo-Manuel De Villena; Leonard McMillan

  Inferring ancestry in admixed populations using microarray probe intensities

  2012 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2012. 2012:105-112.
  0

• 10.

  2011

  Stefan Kärst; Riyan Cheng; Armin O. Schmitt; Hyuna Yang; Fernando Pardo Manuel De Villena; Abraham A. Palmer; Gudrun A. Brockmann

  Genetic determinants for intramuscular fat content and water-holding capacity in mice selected for high muscle mass

  Mammalian Genome. 2011;22(9-10):530-543.
  2

• 11.

  2011

  Charles R. Farber; Scott A. Kelly; Ethan Baruch; Daniel Yu; Kunjie Hua; Derrick L Nehrenberg; Fernando Pardo-Manuel De Villena; Ryan J. Buus; Theodore Garland Jr.; Daniel Pomp

  Identification of quantitative trait loci influencing skeletal architecture in mice: Emergence of Cdh11 as a primary candidate gene regulating femoral morphology

  Journal of Bone and Mineral Research. 2011;26(9):2174-2183.
  3

• 12.

  2011

  Caroline Durrant; Hanna Tayem; Binnaz Yalcin; James Cleak; Leo Goodstadt; Fernando Pardo-Manuel De Villena; Richard Mott; Fuad A. Iraqi

  Collaborative Cross mice and their power to map host susceptibility to Aspergillus fumigatus infection

  Genome Research. 2011;21(8):1239-1248.
  9

• 13.

  2011

  David L. Aylor; William Valdar; Wendy Foulds-Mathes; Ryan J. Buus; Ricardo A. Verdugo; Ralph S. Baric; Martin T. Ferris; Jeff A. Frelinger; Mark Heise; Matt B. Frieman; et al.

  Genetic analysis of complex traits in the emerging Collaborative Cross

  Genome Research. 2011;21(8):1213-1222.
  57

• 14.

  2011

  Harry Hochheiser; Bruce J. Aronow; Kristin Artinger; Terri H. Beaty; James F. Brinkley; Yang Chai; David Clouthier; Michael L. Cunningham; Michael Dixon; Leah Rae Donahue; et al.

  The FaceBase Consortium: A comprehensive program to facilitate craniofacial research

  Developmental Biology. 2011;355(2):175-182.
  8

• 15.

  2011

  Hyuna Yang; Jeremy R. Wang; John P. Didion; Ryan J. Buus; Timothy A. Bell; Catherine E. Welsh; Franãois Bonhomme; Alex Hon-Tsen Yu; Michael W. Nachman; Jaroslav Pialek; et al.

  Subspecific origin and haplotype diversity in the laboratory mouse

  Nature Genetics. 2011;43(7):648-655.
  44

• 16.

  2011

  Wendy Foulds Mathes; David L. Aylor; Darla R. Miller; Gary A. Churchill; Elissa J. Chesler; Fernando Pardo-Manuel de Villena; David W. Threadgill; Daniel Pomp

  Architecture of energy balance traits in emerging lines of the Collaborative Cross

  American Journal of Physiology - Endocrinology and Metabolism. 2011;300(6):E1124-E1134.
  6

• 17.

  2011

  Chris Showell; Samantha Carruthers; Amanda Hall; Fernando Pardo-Manuel de Villena; Derek Stemple; Frank L. Conlon

  A comparative survey of the frequency and distribution of polymorphism in the genome of xenopus tropicalis

  PLoS ONE. 2011;6(8).
  2

• 18.

  2011

  David W. Threadgill; Darla R. Miller; Gary A. Churchill; Fernando Pardo-Manuel de Villena

  The collaborative cross: A recombinant inbred mouse population for the systems genetic era

  ILAR Journal. 2011;52(1):24-31.
  14

• 19.

  2011

  Jeremy Wang; Fernando Pardo-Manuel De Villena; Leonard McMillan

  Dynamic visualization and comparative analysis of multiple collinear genomic data

  2011 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2011. 2011:335-339.
  0

• 20.

  2010

  Derrick L. Nehrenberg; Shiliang Wang; Ryan J. Buus; James Perkins; Fernando P. de Villena; Daniel Pomp

  Genomic mapping of social behavior traits in a F2 cross derived from mice selectively bred for high aggression

  BMC Genetics. 2010;11.
  2

• 21.

  2010

  Chevonne D. Eversley; Tavia Clark; Yuying Xie; Jill Steigerwalt; Timothy A. Bell; Fernando P.M. de Villena; David W. Threadgill

  Genetic mapping and developmental timing of transmission ratio distortion in a mouse interspecific backcross

  BMC Genetics. 2010;11.
  2

• 22.

  2010

  Scott A. Kelly; Derrick L. Nehrenberg; Jeremy L. Peirce; Kunjie Hua; Brian M. Steffy; Tim Wiltshire; Fernando Pardo-Manuel De Villena; Theodore Garland Jr.; Daniel Pomp

  Genetic architecture of voluntary exercise in an advanced intercross line of mice

  Physiological Genomics. 2010;42(2):190-200.
  20

• 23.

  2010

  Eric Yi Liu; Qi Zhang; Leonard McMillan; Fernando Pardo-Manuel de Villena; Wei Wang

  Efficient genome ancestry inference in complex pedigrees with inbreeding

  Bioinformatics. 2010;26(12):i199-i207.
  7

• 24.

  2010

  Soumya A. Vemuganti; Fernando P. de Villena; Deborah A. O'Brien

  Frequent and recent retrotransposition of orthologous genes plays a role in the evolution of sperm glycolytic enzymes

  BMC Genomics. 2010;11(1).
  2

• 25.

  2010

  Jeremy Wang; Kyle J. Moore; Qi Zhang; Fernando Pardo-Manual De Villena; Wei Wang; Leonard McMillan

  Genome-wide compatible SNP intervals and their properties

  2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010. 2010:43-52.
  1

• 26.

  2010

  Lucie N Hutchins; Yueming Ding; Jin P Szatkiewicz; Randy Von Smith; Hyuna Yang; Fernando Pardo-Manuel de Villena; Gary A Churchill; Joel H Graber

  CGDSNPdb: a database resource for error-checked and imputed mouse SNPs.

  Database : the journal of biological databases and curation. 2010;2010:baq008.
  4

• 27.

  2009

  Hyuna Yang; Yueming Ding; Lucie N. Hutchins; Jin Szatkiewicz; Timothy A. Bell; Beverly J. Paigen; Joel H. Graber; Fernando Pardo-Manuel de Villena; Gary A. Churchill

  A customized and versatile high-density genotyping array for the mouse

  Nature Methods. 2009;6(9):663-666.
  65

• 28.

  2009

  Qi Zhang; Wei Wang; Leonard Mcmillan; Fernando Pardo-Manuel De Villena; David Threadgill

  Inferring genome-wide mosaic structure

  Pacific Symposium on Biocomputing 2009, PSB 2009. 2009:150-161.
  4

• 29.

  2009

  Feng Pan; Leonard Mcmillan; Fernando Pardo-Manuel De Villena; David Threadgill; Wei Wang

  Treeqa: Quantitative genome wide association mapping using local perfect phylogeny trees

  Pacific Symposium on Biocomputing 2009, PSB 2009. 2009:415-426.
  4

• 30.

  2008

  Jin P. Szatkiewicz; Glen L. Beane; Yueming Ding; Lucie Hutchins; Fernando Pardo-Manuel De Villena; Gary A. Churchill

  An imputed genotype resource for the laboratory mouse

  Mammalian Genome. 2008;19(3):199-208.
  55

• 31.

  2008

  Qi Zhang; Wei Wang; Leonard McMillan; Jan Prins; Fernando Pardo-Manuel De Villena; David Threadgill

  Genotype sequence segmentation: Handling constraints and noise

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2008;5251 LNBI:271-283.
  2

• 32.

  2008

  Feng Pan; Lynda Yang; Leonard McMillan; Fernando Pardo Manuel De Villena; David Threadgill; Wei Wang

  Quantitative association analysis using tree hierarchies

  Proceedings - IEEE International Conference on Data Mining, ICDM. 2008:971-976.
  0

• 33.

  2007

  Fred A. Wright; Hanwen Huang; Xiaojun Guan; Kevin Gamiel; Clark Jeffries; William T. Barry; Fernando Pardo-manuel de Villena; Patrick F. Sullivan; Kirk C. Wilhelmsen; Fei Zou

  Simulating association studies: A data-based resampling method for candidate regions or whole genome scans

  Bioinformatics. 2007;23(19):2581-2588.
  24

• 34.

  2007

  Soumya A. Vemuganti; Timothy A. Bell; Cameron O. Scarlett; Carol E. Parker; Fernando Pardo-Manuel de Villena; Deborah A. O'Brien

  Three male germline-specific aldolase A isozymes are generated by alternative splicing and retrotransposition

  Developmental Biology. 2007;309(1):18-31.
  16

• 35.

  2007

  Hyuna Yang; Timothy A. Bell; Gary A. Churchill; Fernando Pardo-Manuel De Villena

  On the subspecific origin of the laboratory mouse

  Nature Genetics. 2007;39(9):1100-1107.
  134

• 36.

  2007

  Adam Roberts; Fernando Pardo-Manuel De Villena; Wei Wang; Leonard McMillan; David W. Threadgill

  The polymorphism architecture of mouse genetic resources elucidated using genome-wide resequencing data: Implications for QTL discovery and systems genetics

  Mammalian Genome. 2007;18(6-7):473-481.
  61

• 37.

  2007

  Folami Y. Ideraabdullah; Kuikwon Kim; Daniel Pomp; Jennifer L. Moran; David Beier; Fernando Pardo-Manuel De Villena

  Rescue of the mouse DDK syndrome by parent-of-origin-dependent modifiers

  Biology of Reproduction. 2007;76(2):286-293.
  2

• 38.

  2007

  Feng Pan; Adam Roberts; Leonard McMillan; Fernando Pardo Manuel De Villena; David Threadgill; Wei Wang

  Sample selection for maximal diversity

  Proceedings - IEEE International Conference on Data Mining, ICDM. 2007:262-271.
  1

• 39.

  2006

  Timothy A. Bell; Elena De La Casa-Esperón; Heather E. Doherty; Folami Ideraabdullah; Kuikwon Kim; Yunfei Wang; Leslie A. Lange; Kirk Wilhemsen; Ethan M. Lange; et al.

  The paternal gene of the DDK syndrome maps to the Schlafen gene cluster on mouse chromosome 11

  Genetics. 2006;172(1):411-423.
  14

• 40.

  2005

  Guangming Wu; Lanping Hao; Zhiming Han; Shaorong Gao; Keith E. Latham; Fernando Pardo-Manuel De Villena; Carmen Sapienza

  Maternal transmission ratio distortion at the mouse Om locus results from meiotic drive at the second meiotic division

  Genetics. 2005;170(1):327-334.
  13

• 41.

  2005

  Kuikwon Kim; Sanlare Thomas; I. Brian Howard; Timothy A. Bell; Heather E. Doherty; Folami Ideraabdullah; David A. Detwiler; Fernando Pardo-Manuel De Villena

  Meiotic drive at the Om locus in wild-derived inbred mouse strains

  Biological Journal of the Linnean Society. 2005;84(3):487-492.
  5

• 42.

  2004

  Gary A. Churchill; David C. Airey; Hooman Allayee; Joe M. Angel; Alan D. Attie; Jackson Beatty; Willam D. Beavis; John K. Belknap; Beth Bennett; Wade Berrettini; et al.

  The Collaborative Cross, a community resource for the genetic analysis of complex traits

  Nature Genetics. 2004;36(11):1133-1137.
  287

• 43.

  2004

  Willie Wilson III; Fernando Pardo-Manuel De Villena; Beverly D. Lyn-Cook; Pradeep K. Chatterjee; Timothy A. Bell; David A. Detwiler; Rodney C. Gilmore; Isis C. Valladeras; Camille C. Wright; David W. Threadgill; et al.

  Characterization of a common deletion polymorphism of the UGT2B17 gene linked to UGT2B15

  Genomics. 2004;84(4):707-714.
  64

• 44.

  2004

  Folami Y. Ideraabdullah; Elena de la Casa-Esperón; Timothy A. Bell; David A. Detwiler; Terry Magnuson; Carmen Sapienza; Fernando Pardo-Manuel de Villena

  Genetic and haplotype diversity among wild-derived mouse inbred strains

  Genome Research. 2004;14(10 A):1880-1887.
  42

• 45.

  2003

  Jesse Mager; Nathan D. Montgomery; Fernando Pardo-Manuel De Villena; Terry Magnuson

  Genome imprinting regulated by the mouse Polycomb group protein Eed

  Nature Genetics. 2003;33(4):502-507.
  157

• 46.

  2002

  Elena De La Casa-Esperón; J. Concepción Loredo-Osti; Fernando Pardo-Manuel De Villena; Tammi L. Briscoe; Jan Michel Malette; Joe E. Vaughan; Kenneth Morgan; Carmen Sapienza

  X chromosome effect on maternal recombination and meiotic drive in the mouse

  Genetics. 2002;161(4):1651-1659.
  18

• 47.

  2002

  Fernando Pardo-Manuel De Villena; Carmen Sapienza

  Erratum: Female meiosis drives karyotypic evolution in mammals (Genetics 159 (1179-1189))

  Genetics. 2002;160(3):1263.
  0

• 48.

  2001

  F. Pardo-Manuel De Villena; C. Sapienza

  Transmission of Robertsonian chromosomes through human female meiosis

  Cytogenetics and Cell Genetics. 2001;92(3-4):342-344.
  3

• 49.

  2001

  Fernando Pardo-Manuel De Villena; Carmen Sapienza

  Nonrandom segregation during meiosis: The unfairness of females

  Mammalian Genome. 2001;12(5):331-339.
  78

• 50.

  2001

  Fernando Pardo-Manuel De Villena; Carmen Sapienza

  Recombination is proportional to the number of chromosome arms in mammals

  Mammalian Genome. 2001;12(4):318-322.
  40

• 51.

  2001

  Fernando De Villena; Carmen Sapienza

  Transmission ratio distortion in offspring of heterozygous female carriers of Robertsonian translocations

  Human Genetics. 2001;108(1):31-36.
  37

• 52.

  2001

  Jesús E. Paz-Miguel; Fernando Pardo-Manuel De Villena; Pablo Sánchez-Velasco; Francisco Leyva-Cobián

  H2-haplotype-dependent unequal transmission of the 17¹⁶ translocation chromosome from Ts65Dn females

  Mammalian Genome. 2001;12(1):83-85.
  6

• 53.

  2001

  Fernando Pardo-Manuel De Villena; Carmen Sapienza

  Female meiosis drives karyotypic evolution in mammals

  Genetics. 2001;159(3):1179-1189.
  79

• 54.

  2000

  Fernando Pardo-Manuel de Villena; Elena De la Casa-Esperón; Carmen Sapienza

  Natural selection and the function of genome imprinting: Beyond the silenced minority

  Trends in Genetics. 2000;16(12):573-579.
  50

• 55.

  2000

  Fernando Pardo-Manuel De Villena; Elena De La Casa-Esperón; Jean W. Williams; Jan-Michel Malette; Michelle Rosa; Carmen Sapienza

  Heritability of the maternal meiotic drive system linked to Om and high- resolution mapping of the Responder locus in mouse

  Genetics. 2000;155(1):283-289.
  19

• 56.

  2000

  Fernando Pardo-Manuel De Villena; Elena De La Casa-Esperón; Tammi L. Briscoe; Jan-Michel Malette; Carmen Sapienza

  Male-offspring-specific, haplotype-dependent, nonrandom cosegregation of alleles at loci on two mouse chromosomes

  Genetics. 2000;154(1):351-356.
  13

• 57.

  2000

  Fernando Pardo-Manuel De Villena; Elena De La Casa-Esperón; Tammi L. Briscoe; Carmen Sapienza

  A genetic test to determine the origin of maternal transmission ratio distortion: Meiotic drive at the mouse Om locus

  Genetics. 2000;154(1):333-342.
  32

• 58.

  2000

  Elena De La Casa-Esperón; Fernando Pardo-Manuel De Villena; Andrei E. Verner; Tammi L. Briscoe; Jan Michel Malette; Michelle Rosa; Wen-Hui Jin; Carmen Sapienza

  Sex-of-offspring-specific transmission ratio distortion on mouse chromosome X

  Genetics. 2000;154(1):343-350.
  15

• 59.

  1999

  Fernando Pardo-Manuel De Villena; Elena De La Casa-Esperón; Andrei Verner; Kenneth Morgan; Carmen Sapienza

  The maternal DDK syndrome phenotype is determined by modifier genes that are not linked to Om

  Mammalian Genome. 1999;10(5):492-497.
  18

• 60.

  1997

  Fernando Pardo-Manuel De Villena; Anna K. Naumova; Andrei E. Verner; Wen-Hui Jin; Carmen Sapienza

  Confirmation of maternal transmission ratio distortion at Om and direct evidence that the maternal and paternal 'DDK syndrome' genes are linked

  Mammalian Genome. 1997;8(9):642-646.
  33

• 61.

  1997

  Damián Heine-Suñer; Miguel Angel Díaz-Guillén; Fernando Pardo-Manuel De Villena; Mercedes Robledo; Javier Benítez; Santiago Rodríguez De Córdoba

  A high-resolution map of the regulator of the complement activation gene cluster on 1q32 that integrates new genes and markers

  Immunogenetics. 1997;45(6):422-427.
  25

• 62.

  1996

  F. Pardo-Manuel De Villena; C. Slamka; M. Fonseca; A.K. Naumova; J. Paquette; P. Pannunzio; M. Smith; A. Verner; K. Morgan; C. Sapienza

  Transmission-ratio distortion through F₁ females at chromosome 11 loci linked to Om in the mouse DDK syndrome

  Genetics. 1996;142(4):1299-1304.
  21

• 63.

  1996

  F. Pardo-Manuel De Villena; C. Sapienza

  Genetic mapping of DXYMov15-associated sequences in the pseudoautosomal region of the C57BL/6J strain

  Mammalian Genome. 1996;7(3):237-239.
  1

• 64.

  1995

  Fernando Pardo-Manuel de Villena; Santiago Rodríguez de Córdoba

  C4BPAL2: a second duplication of the C4BPA gene in the human RCA gene cluster

  Immunogenetics. 1995;41(2-3):139-143.
  5

• 65.

  1994

  S.R. De Cordoba; M. Perez-Blas; R. Ramos-Ruiz; P. Sanchez-Corral; F.P.-M. De Villena; J. Rey-Campos

  The gene coding for the β-chain of C4b-binding protein (C4BPB) has become a pseudogene in the mouse

  Genomics. 1994;21(3):501-509.
  21

• 66.

  1993

  M. Eugenia Gonzalez; Fernando Pardo-Manuel de Villena; Elena Fernandez-Ruiz; Santiago Rodriguez de Cordoba; Pedro A. Lazo

  The human CD53 gene, coding for afour transmembrane domain protein, maps to chromosomal region 1p13

  Genomics. 1993;18(3):725-728.
  3

• 67.

  1993

  P. Sanchez-Corral; F.P.-M. De Villena; J. Rey-Campos; S.R. De Cordoba

  C4BPAL1, a member of the human regulator of complement activation (RCA) gene cluster that resulted from the duplication of the gene coding for the α-chain of C4b-binding protein

  Genomics. 1993;17(1):185-193.
  4

• 68.

  1993

  E. Fernandez-Ruiz; F. Pardo-Manuel De Villena; S. Rodriguez De Cordoba; F. Sanchez-Madrid

  Regional localization of the human vitronectin receptor α subunit gene (VNRA) to chromosome 2q31 → q32

  Cytogenetics and Cell Genetics. 1993;62(1):26-28.
  5

• 69.

  1992

  Elena Fernández-Ruiz; Fernando Pardo-Manuel De Villena; Miguel Angel Rubio; Angel L. Corbí; Santiago Rodriguez De Córdoba; Francisco Sánchez-Madrid

  Mapping of the human VLA-α4 gene to chromosome 2q31-q32

  European Journal of Immunology. 1992;22(2):587-590.
  6