Matthew A Coleman

Radiation Oncology

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Matthew A Coleman

• Departments
  Radiation Oncology
  
  

  Current Appointments:

  Prof

  
  
  
Current Appointments:
Prof

H-Index:20

This is a list of publications by this researcher, listed chronologically starting with the most recent first. New publications appear in this list weekly. The source of publications and 'cited by' data for this application is Scopus.

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• 1.

  2012

  Feliza A. Bourguet; Brian E. Souza; Angela K. Hinz; Matthew A. Coleman; Paul J. Jackson

  Characterization of a novel lytic protein encoded by the Bacillus cereus E33L gene ampD as a Bacillus anthracis antimicrobial protein

  Applied and Environmental Microbiology. 2012;78(8):3025-3027.
  1

• 2.

  2012

  Tingjuan Gao; Jitka Petrlova; Wei He; Thomas Huser; Wieslaw Kudlick; John Voss; Matthew A. Coleman

  Characterization of De Novo Synthesized GPCRs Supported in Nanolipoprotein Discs

  PLoS ONE. 2012;7(9).
  0

• 3.

  2012

  Helen Budworth; Antoine M. Snijders; Francesco Marchetti; Brandon Mannion; Sandhya Bhatnagar; Ely Kwoh; Yuande Tan; Shan X. Wang; William F. Blakely; Matthew Coleman; et al.

  DNA Repair and Cell Cycle Biomarkers of Radiation Exposure and Inflammation Stress in Human Blood

  PLoS ONE. 2012;7(11).
  0

• 4.

  2011

  Tingjuan Gao; Craig D. Blanchette; Wei He; Feliza Bourguet; Sonny Ly; Federico Katzen; Wieslaw A. Kudlicki; Paul T. Henderson; Ted A. Laurence; Thomas Huser; et al.

  Characterizing diffusion dynamics of a membrane protein associated with nanolipoproteins using fluorescence correlation spectroscopy

  Protein Science. 2011;20(2):437-447.
  2

• 5.

  2011

  Matthew A. Coleman; Patricia A. Escobar; Brinda Mahadevan

  Omics-Current applications in toxicology

  Mutation Research - Genetic Toxicology and Environmental Mutagenesis. 2011;722(2):93.
  0

• 6.

  2011

  A.J. Wyrobek; C.F. Manohar; V.V. Krishnan; D.O. Nelson; M.R. Furtado; M.S. Bhattacharya; F. Marchetti; M.A. Coleman

  Low dose radiation response curves, networks and pathways in human lymphoblastoid cells exposed from 1 to 10cGy of acute gamma radiation

  Mutation Research - Genetic Toxicology and Environmental Mutagenesis. 2011;722(2):119-130.
  6

• 7.

  2010

  Angélica Martínez; Matthew Coleman; Carlos Alejandro Romero-Talamás; Sara Frías

  An assessment of immediate DNA damage to occupationally exposed workers to low dose ionizing radiation by using the comet assay

  Revista de Investigacion Clinica. 2010;62(1):23-30.
  1

• 8.

  2010

  Ruba Khnouf; Daniel Olivero; Shouguang Jin; Matthew A. Coleman; Z. Hugh Fan

  Cell-free expression of soluble and membrane proteins in an array device for drug screening

  Analytical Chemistry. 2010;82(16):7021-7026.
  11

• 9.

  2009

  Harry R. Beller; Tina C. Legler; Feliza Bourguet; Tracy E. Letain; Staci R. Kane; Matthew A. Coleman

  Identification of c-type cytochromes involved in anaerobic, bacterial U(IV) oxidation

  Biodegradation. 2009;20(1):45-53.
  3

• 10.

  2009

  Jenny A. Cappuccio; Angela K. Hinz; Edward A. Kuhn; Julia E. Fletcher; Erin S. Arroyo; Paul T. Henderson; Craig D. Blanchette; Vickie L. Walsworth; Michele H. Corzett; Richard J. Law; et al.

  Cell-free expression for nanolipoprotein particles: Building a high-throughput membrane protein solubility platform

  Methods in Molecular Biology. 2009;498:273-295.
  16

• 11.

  2009

  Craig D. Blanchette; Jenny A. Cappuccio; Edward A. Kuhn; Brent W. Segelke; W. Henry Benner; Brett A. Chromy; Matthew A. Coleman; Graham Bench; Paul D. Hoeprich; et al.

  Atomic force microscopy differentiates discrete size distributions between membrane protein containing and empty nanolipoprotein particles

  Biochimica et Biophysica Acta - Biomembranes. 2009;1788(3):724-731.
  9

• 12.

  2009

  Sarah E. Baker; Robert C. Hopkins; Craig D. Blanchette; Vicki L. Walsworth; Rhoda Sumbad; Nicholas O. Fischer; Edward A. Kuhn; Matt Coleman; Brett A. Chromy; Sonia E. Létant; et al.

  Hydrogen production by a hyperthermophilic membrane-bound hydrogenase in water-soluble nanolipoprotein particles

  Journal of the American Chemical Society. 2009;131(22):7508-7509.
  16

• 13.

  2009

  Craig D. Blanchette; Brent W. Segelke; Nicholas Fischer; Michele H. Corzett; Edward A. Kuhn; Jenny A. Cappuccio; William Henry Benner; Matthew A. Coleman; Brett A. Chromy; Graham Bench; et al.

  Characterization and purification of polydisperse reconstituted lipoproteins and nanolipoprotein particles

  International Journal of Molecular Sciences. 2009;10(7):2958-2971.
  5

• 14.

  2009

  Leif E. Peterson; Matthew A. Coleman

  Logistic ensembles of Random Spherical Linear Oracles for microarray classification

  International Journal of Data Mining and Bioinformatics. 2009;3(4):382-397.
  2

• 15.

  2008

  Leif E. Peterson; Matthew A. Coleman

  Machine learning-based receiver operating characteristic (ROC) curves for crisp and fuzzy classification of DNA microarrays in cancer research

  International Journal of Approximate Reasoning. 2008;47(1):17-36.
  11

• 16.

  2008

  Craig D. Blanchette; Richard Law; W. Henry Benner; Joseph B. Pesavento; Jenny A. Cappuccio; Vicki Walsworth; Edward A. Kuhn; Michele Corzett; Brett A. Chromy; et al.

  Quantifying size distributions of nanolipoprotein particles with single-particle analysis and molecular dynamic simulations

  Journal of Lipid Research. 2008;49(7):1420-1430.
  17

• 17.

  2008

  Samir Narayan; Joerg Lehmann; Matthew A. Coleman; Andrew Vaughan; Claus Chunli Yang; Danny Enepekides; Gregory Farwell; James A. Purdy; Grace Laredo; et al.

  Prospective Evaluation to Establish a Dose Response for Clinical Oral Mucositis in Patients Undergoing Head-and-Neck Conformal Radiotherapy

  International Journal of Radiation Oncology Biology Physics. 2008;72(3):756-762.e4.
  9

• 18.

  2008

  Federico Katzen; Julia E. Fletcher; Jian-Ping Yang; Douglas Kang; Todd C. Peterson; Jenny A. Cappuccio; Craig D. Blanchette; Todd Sulchek; Brett A. Chromy; Paul D. Hoeprich; et al.

  Insertion of membrane proteins into discoidal membranes using a cell-free protein expression approach

  Journal of Proteome Research. 2008;7(8):3535-3542.
  40

• 19.

  2008

  Angélica Martinez; John M. Hinz; Laura Gómez; Bertha Molina; Hilda Acuña; Irene M. Jones; Sara Frias; Matthew A. Coleman

  Differential expression of TP53 associated genes in Fanconi anemia cells after mitomycin C and hydroxyurea treatment

  Mutation Research - Genetic Toxicology and Environmental Mutagenesis. 2008;656(1-2):1-7.
  5

• 20.

  2008

  Leif E. Peterson; Matthew A. Coleman

  Text-mining protein-protein interaction corpus using concept clustering to identify intermittency

  Proceedings of the International Joint Conference on Neural Networks. 2008:3634-3640.
  1

• 21.

  2008

  Jenny A. Cappuccio; Craig D. Blanchette; Todd A. Sulchek; Erin S. Arroyo; Joel M. Kralj; Angela K. Hinz; Edward A. Kuhn; Brett A. Chromy; Brent W. Segelke; Kenneth J. Rothschild; et al.

  Cell-free co-expression of functional membrane proteins and apolipoprotein, forming soluble nanolipoprotein particles

  Molecular and Cellular Proteomics. 2008;7(11):2246-2253.
  33

• 22.

  2007

  Brett A. Chromy; Erin Arroyo; Craig D. Blanchette; Graham Bench; Henry Benner; Jenny A. Cappuccio; Matthew A. Coleman; Paul T. Henderson; Angie K. Hinz; et al.

  Different apolipoproteins impact nanolipoprotein particle formation

  Journal of the American Chemical Society. 2007;129(46):14348-14354.
  31

• 23.

  2007

  Matthew A Coleman; Peter T Beernink; Julio A Camarero; Joanna S Albala

  Applications of functional protein microarrays: identifying protein-protein interactions in an array format.

  Methods in molecular biology (Clifton, N.J.). 2007;385:121-130.
  2

• 24.

  2007

  Leif E. Peterson; Matthew A. Coleman

  Logistic ensembles for random spherical linear oracles

  Proceedings - 6th International Conference on Machine Learning and Applications, ICMLA 2007. 2007:618-623.
  0

• 25.

  2006

  Harry R. Beller; Patrick S. G. Chain; Tracy E. Letain; Anu Chakicherla; Frank W. Larimer; Paul M. Richardson; Matthew A. Coleman; Ann P. Wood; Donovan P. Kelly

  The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans

  Journal of Bacteriology. 2006;188(4):1473-1488.
  82

• 26.

  2006

  Leif E. Peterson; Matthew A. Coleman

  Comparison of gene identification based on artificial neural network pre-processing with k-means cluster and principal component analysis

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2006;3849 LNAI:267-276.
  1

• 27.

  2006

  Ling Liu; Jianjun Zhang; Wei Han; Calton Pu; James Caverlee; Sungkeun Park; Terence Critchlow; David Buttler; Matthew Coleman

  XWRAPComposer: A multi-page data extraction service

  International Journal of Web Services Research. 2006;3(2):33-60.
  0

• 28.

  2006

  Youngeun Kwon; Matthew A. Coleman; Julio A. Camarero

  Selective immobilization of proteins onto solid supports through split-intein-mediated protein trans-splicing

  Angewandte Chemie - International Edition. 2006;45(11):1726-1729.
  54

• 29.

  2006

  Harry R. Beller; Tracy E. Letain; Anu Chakicherla; Staci R. Kane; Tina C. Legler; Matthew A. Coleman

  Whole-genome transcriptional analysis of chemolithoautotrophic thiosulfate oxidation by Thiobacillus denitrificans under aerobic versus denitrifying conditions

  Journal of Bacteriology. 2006;188(19):7005-7015.
  21

• 30.

  2006

  Francesco Marchetti; Matthew A. Coleman; Irene M. Jones; Andrew J. Wyrobek

  Candidate protein biodosimeters of human exposure to ionizing radiation

  International Journal of Radiation Biology. 2006;82(9):605-639.
  57

• 31.

  2005

  Matthew A. Coleman; Eric Yin; Leif E. Peterson; David Nelson; Karen Sorensen; James D. Tucker; Andrew J. Wyrobek

  Low-dose irradiation alters the transcript profiles of human lymphoblastoid cells including genes associated with cytogenetic radioadaptive response

  Radiation Research. 2005;164(4 I):369-382.
  68

• 32.

  2005

  Ling Liu; Jianjun Zhang; Wei Han; Calton Pu; James Caverlee; Sungkeun Park; Terence Critchlow; Matthew Coleman; David Buttler

  XWRAPComposer: A multi-page data extraction service for bio-computing applications

  Proceedings - 2005 IEEE International Conference onServices Computing, SCC 2005. 2005;I:271-278.
  0

• 33.

  2005

  R.S. Rao; J.S. Albala; S.L. Lane; D.L. Matthews; A.M. Fisher; J.L. Lambert; M.A. Coleman

  Developing rapid, point-of-care, multiplex detection for use in lateral flow devices

  Proceedings of SPIE - The International Society for Optical Engineering. 2005;6007.
  1

• 34.

  2004

  Lisa M. Tomascik-Cheeseman; Matthew A. Coleman; Francesco Marchetti; David O. Nelson; Laura M. Kegelmeyer; Joginder Nath; Andrew J. Wyrobek

  Differential basal expression of genes associated with stress response, damage control, and DNA repair among mouse tissues

  Mutation Research - Genetic Toxicology and Environmental Mutagenesis. 2004;561(1-2):1-14.
  13

• 35.

  2004

  Brent W. Segelke; Johana Schafer; Matthew A. Coleman; Tim P. Lekin; Dominique Toppani; Krzysztof J. Skowronek; Katherine A. Kantardjieff; Bernhard Rupp

  Laboratory scale structural genomics

  Journal of Structural and Functional Genomics. 2004;5(1-2):147-157.
  11

• 36.

  2004

  Rupa S. Rao; Steven R. Visuri; Mary T. McBride; Joanna S. Albala; Dennis L. Matthews; Matthew A. Coleman

  Comparison of multiplexed techniques for detection of bacterial and viral proteins

  Journal of Proteome Research. 2004;3(4):736-742.
  42

• 37.

  2004

  Vladimir L. Motin; Anca M. Georgescu; Joseph P. Fitch; Pauline P. Gu; David O. Nelson; Shalini L. Mabery; Janine B. Garnham; Bahrad A. Sokhansanj; Linda L. Ott; Matthew A. Coleman; et al.

  Temporal global changes in gene expression during temperature transition in Yersinia pestis

  Journal of Bacteriology. 2004;186(18):6298-6305.
  73

• 38.

  2004

  M.A. Coleman; V.H. Lao; B.W. Segelke; P.T. Beernink

  High-throughput, fluorescence-based screening for soluble protein expression

  Journal of Proteome Research. 2004;3(5):1024-1032.
  29

• 39.

  2004

  Julio A. Camarero; Youngeun Kwon; Matthew A. Coleman

  Chemoselective attachment of biologically active proteins to surfaces by expressed protein ligation and its application for "protein chip" fabrication

  Journal of the American Chemical Society. 2004;126(45):14730-14731.
  91

• 40.

  2004

  Julio A. Camarero; Chin Li Cheung; Matthew A. Coleman; James J. De Yoreo

  Chemoselective attachment of biologically active proteins to surfaces by native chemical ligation

  Materials Research Society Symposium Proceedings. 2004;EXS(1):237-239.
  0

• 41.

  2003

  Matthew A. Coleman; Kristi A. Miller; Peter T. Beernink; Daniel M. Yoshikawa; Joanna S. Albala

  Identification of chromatin-related protein interactions using protein microarrays

  Proteomics. 2003;3(11):2101-2107.
  18

• 42.

  2003

  E. Yin; D.O. Nelson; M.A. Coleman; L.E. Peterson; A.J. Wyrobek

  Gene expression changes in mouse brain after exposure to low-dose ionizing radiation

  International Journal of Radiation Biology. 2003;79(10):759-775.
  98

• 43.

  2002

  David Buttler; Matthew Coleman; Terence Critchlow; Renato Fileto; Wei Han; Calton Pu; Daniel Rocco; Li Xiong

  Querying multiple bioinformatics information sources: Can Semantic Web research help?

  SIGMOD Record. 2002;31(4):59-64.
  23

• 44.

  2000

  Matthew A. Coleman; Jonathan A. Eisen; Harvey W. Mohrenweiser

  Cloning and characterization of HARP/SMARCAL1: A prokaryotic hepA- related SNF2 helicase protein from human and mouse

  Genomics. 2000;65(3):274-282.
  36

• 45.

  2000

  M.Z. Hadi; M.A. Coleman; K. Fidelis; H.W. Mohrenweiser; D.M. Wilson III

  Functional characterization of Ape1 variants identified in the human population

  Nucleic Acids Research. 2000;28(20):3871-3879.
  114

• 46.

  1998

  Sanjiv Ghanshani; Matt Coleman; Peter Gustavsson; Annabelle Chia-Ling Wu; J. Jay Gargus; George A. Gutman; Niklas Dahl; Harvey Mohrenweiser; K. George Chandy

  Human calcium-activated potassium channel gene KCNN4 maps to chromosome 19q13.2 in the Region deleted in Diamond-Blackfan anemia

  Genomics. 1998;51(1):160-161.
  18

• 47.

  1998

  David M. Wilson III; James P. Carney; Matthew A. Coleman; Aaron W. Adamson; Mari Christensen; Jane E. Lamerdin

  Hex1: A new human Rad2 nuclease family member with homology to yeast exonuclease 1

  Nucleic Acids Research. 1998;26(16):3762-3768.
  69

• 48.

  1998

  Xiaomei Liu; Min Joo Lee; Matthew Coleman; Parshuram Rath; Anders Nilsson; Wolfgang B. Fischer; Marina Bizounok; Judith Herzfeld; Willem F. Jan Karstens; Jan Raap; et al.

  Detection of threonine structural changes upon formation of the M-intermediate of bacteriorhodopsin: Evidence for assignment to Thr-89

  Biochimica et Biophysica Acta - Bioenergetics. 1998;1365(3):363-372.
  5

• 49.

  1997

  Terence S. Russell; Matthew Coleman; Parshuram Rath; Anders Nilsson; Kenneth J. Rothschild

  Threonine-89 participates in the active site of bacteriorhodopsin: Evidence for a role in color regulation and schiff base proton transfer

  Biochemistry. 1997;36(24):7490-7497.
  15

• 50.

  1996

  Sanjay Sonar; Chan-Ping Lee; Cheryl F.C. Ludlam; Xiao-Mei Liu; Matthew Coleman; Thomas Marti; Uttam L. RajBhandary; Kenneth J. Rothschild

  Site-directed isotope labeling of membrane proteins: A new tool for spectroscopists

  Techniques in Protein Chemistry. 1996;7(C):151-159.
  4

• 51.

  1995

  Matthew Coleman; Anders Nilsson; Terence S. Russell; Parshuram Rath; Rashmi Pandey; Kenneth J. Rothschild

  Asp 46 can substitute for Asp 96 as the Schiff base proton donor in bacteriorhodopsin

  Biochemistry. 1995;34(47):15599-15606.
  6

• 52.

  1995

  C.F.C. Ludlam; S. Sonar; C.-P. Lee; M. Coleman; J. Herzfeld; U.L. RajBhandary; K.J. Rothschild

  Site-directed isotope labeling and ATR-FTIR difference spectroscopy of bacteriorhodopsin: The peptide carbonyl group of Tyr 185 is structurally active during the bR → N transition

  Biochemistry. 1995;34(1):2-6.
  62

• 53.

  1995

  Xiao-Mei Liu; Sanjay Sonar; Chan-Ping Lee; Matthew Coleman; Uttam L. RajBhandary; Kenneth J. Rothschild

  Site-directed isotope labeling and FTIR spectroscopy: Assignment of tyrosine bands in the bR → M difference spectrum of bacteriorhodopsin

  Biophysical Chemistry. 1995;56(1-2):63-70.
  21

• 54.

  1995

  S. Sonar; Liu Xiao-Mei; Lee Chan-Ping; M. Coleman; He Yi-Wu; S. Pelletier; J. Herzfeld; U.L. RajBhandary; K.J. Rothschild

  Site-directed isotope labeling and FT-IR spectroscopy: The Tyr 185/Pro 186 peptide bond of bacteriorhodopsin is perturbed during the primary photoreaction

  Journal of the American Chemical Society. 1995;117(46):11614-11615.
  11

• 55.

  1995

  Anders Nilsson; Parshuram Rath; Jerzy Olejnik; Matthew Coleman; Kenneth J. Rothschild

  Protein conformational changes during the bacteriorhodopsin photocycle: A fourier transform infrared/resonance Raman study of the alkaline form of the mutant Asp-85 → Asn

  Journal of Biological Chemistry. 1995;270(50):29746-29751.
  19

• 56.

  1994

  S. Sonar; T. Marti; P. Rath; W. Fischer; M. Coleman; A. Nilsson; H.G. Khorana; K.J. Rothschild

  A redirected proton pathway in the bacteriorhodopsin mutant Tyr-57 → Asp. Evidence for proton translocation without Schiff base deprotonation

  Journal of Biological Chemistry. 1994;269(46):28851-28858.
  19

• 57.

  1994

  Sanjay Sonar; Chan-Ping Lee; Matthew Coleman; Nilam Patel; Xiaomei Liu; Thomas Marti; H. Gobind Khorana; Uttam L. RajBhandary; Kenneth J. Rothschild

  Site-directed isotope labelling and FTIR spectroscopy of bacteriorhodopsin

  Nature Structural Biology. 1994;1(8):512-517.
  46