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71 Publications

This is a list of publications by this researcher, listed chronologically starting with the most recent first. New publications appear in this list weekly. The source of publications for this application is PubMed, so only PubMed publications are included.

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1.
2012

Adi Laurentiu Tarca; Sorin Draghici; Gaurav Bhatti; Roberto Romero

Down-weighting overlapping genes improves gene set analysis.
BMC bioinformatics 2012;13():136.
2.
2012

Josep M Mercader; Montserrat Puiggros; Ayellet V Segrè; Evarist Planet; Eleonora Sorianello; David Sebastian; Sergio Rodriguez-Cuenca; Vicent Ribas; Sílvia Bonàs-Guarch; Sorin Draghici; et al.

Identification of novel type 2 diabetes candidate genes involved in the crosstalk between the mitochondrial and the insulin signaling systems.
PLoS genetics 2012;8(12):e1003046.
3.
2011

Stephen A Krawetz; Adele Kruger; Claudia Lalancette; Rebecca Tagett; Ester Anton; Sorin Draghici; Michael P Diamond

A survey of small RNAs in human sperm.
Human reproduction (Oxford, England) 2011;26(12):3401-12.
4.
2011

Luca Beltrame; Enrica Calura; Razvan R Popovici; Lisa Rizzetto; Damariz Rivero Guedez; Michele Donato; Chiara Romualdi; Sorin Draghici; Duccio Cavalieri

The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathways.
Bioinformatics (Oxford, England) 2011;27(15):2127-33.
5.
2011

Deug-Chan Lee; Roberto Romero; Jung-Sun Kim; Adi L Tarca; Daniel Montenegro; Beth L Pineles; Ernest Kim; JoonHo Lee; Sun Young Kim; Sorin Draghici; et al.

miR-210 targets iron-sulfur cluster scaffold homologue in human trophoblast cell lines: siderosis of interstitial trophoblasts as a novel pathology of preterm preeclampsia and small-for-gestational-age pregnancies.
The American journal of pathology 2011;179(2):590-602.
6.
2011

Pooja Mittal; Roberto Romero; Adi L Tarca; Sorin Draghici; Chia-Ling Nhan-Chang; Tinnakorn Chaiworapongsa; John Hotra; Ricardo Gomez; Juan Pedro Kusanovic; Deug-Chan Lee; et al.

A molecular signature of an arrest of descent in human parturition.
American journal of obstetrics and gynecology 2011;204(2):177.e15-33.
7.
2010

Pooja Mittal; Roberto Romero; Adi L Tarca; Juan Gonzalez; Sorin Draghici; Yi Xu; Zhong Dong; Chia-Ling Nhan-Chang; Tinnakorn Chaiworapongsa; Stephen Lye; et al.

Characterization of the myometrial transcriptome and biological pathways of spontaneous human labor at term.
Journal of perinatal medicine 2010;38(6):617-43.
8.
2010

Deug-Chan Lee; Roberto Romero; Chong Jai Kim; Tinnakorn Chaiworapongsa; Adi L Tarca; JoonHo Lee; Yeon-Lim Suh; Shali Mazaki-Tovi; Edi Vaisbuch; Pooja Mittal; et al.

Surfactant protein-A as an anti-inflammatory component in the amnion: implications for human pregnancy.
Journal of immunology (Baltimore, Md. : 1950) 2010;184(11):6479-91.
9.
2010

Duccio Cavalieri; Damariz Rivero; Luca Beltrame; Sonja I Buschow; Enrica Calura; Lisa Rizzetto; Sandra Gessani; Maria C Gauzzi; Walter Reith; Andreas Baur; et al.

DC-ATLAS: a systems biology resource to dissect receptor specific signal transduction in dendritic cells.
Immunome research 2010;6():10.
10.
2010

Sonia S Hassan; Roberto Romero; Beth Pineles; Adi L Tarca; Daniel Montenegro; Offer Erez; Pooja Mittal; Juan Pedro Kusanovic; Shali Mazaki-Tovi; Jimmy Espinoza; et al.

MicroRNA expression profiling of the human uterine cervix after term labor and delivery.
American journal of obstetrics and gynecology 2010;202(1):80.e1-8.
11.
2010

Sally A Madsen-Bouterse; Roberto Romero; Adi L Tarca; Juan Pedro Kusanovic; Jimmy Espinoza; Chong Jai Kim; Jung-Sun Kim; Samuel S Edwin; Ricardo Gomez; Sorin Draghici

The transcriptome of the fetal inflammatory response syndrome.
American journal of reproductive immunology (New York, N.Y. : 1989) 2010;63(1):73-92.
12.
2010

Kumaran Kandasamy; S Sujatha Mohan; Rajesh Raju; Shivakumar Keerthikumar; Ghantasala S Sameer Kumar; Abhilash K Venugopal; Deepthi Telikicherla; J Daniel Navarro; Suresh Mathivanan; Christian Pecquet; et al.

NetPath: a public resource of curated signal transduction pathways.
Genome biology 2010;11(1):R3.
13.
2010

Bogdan Done; Purvesh Khatri; Arina Done; Sorin Drăghici

Predicting novel human gene ontology annotations using semantic analysis.
IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM 2010;7(1):91-9.
14.
2009

Sonia S Hassan; Roberto Romero; Adi L Tarca; Chia-Ling Nhan-Chang; Edi Vaisbuch; Offer Erez; Pooja Mittal; Juan Pedro Kusanovic; Shali Mazaki-Tovi; Lami Yeo; et al.

The transcriptome of cervical ripening in human pregnancy before the onset of labor at term: identification of novel molecular functions involved in this process.
The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians 2009;22(12):1183-93.
15.
2009

Offer Erez; Roberto Romero; Adi L Tarca; Tinnakorn Chaiworapongsa; Yeon Mee Kim; Nandor Gabor Than; Edi Vaisbuch; Sorin Draghici; Gerard Tromp

Differential expression pattern of genes encoding for anti-microbial peptides in the fetal membranes of patients with spontaneous preterm labor and intact membranes and those with preterm prelabor rupture of the membranes.
The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians 2009;22(12):1103-15.
16.
2009

Nandor Gabor Than; Roberto Romero; Adi L Tarca; Sorin Draghici; Offer Erez; Tinnakorn Chaiworapongsa; Yeon Mee Kim; Sun Kwon Kim; Edi Vaisbuch; Gerard Tromp

Mitochondrial manganese superoxide dismutase mRNA expression in human chorioamniotic membranes and its association with labor, inflammation, and infection.
The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians 2009;22(11):1000-13.
17.
2009

Mi Jeong Kim; Roberto Romero; Chong Jai Kim; Adi L Tarca; Sovantha Chhauy; Christopher LaJeunesse; Deug-Chan Lee; Sorin Draghici; Francesca Gotsch; Juan Pedro Kusanovic; et al.

Villitis of unknown etiology is associated with a distinct pattern of chemokine up-regulation in the feto-maternal and placental compartments: implications for conjoint maternal allograft rejection and maternal anti-fetal graft-versus-host disease.
Journal of immunology (Baltimore, Md. : 1950) 2009;182(6):3919-27.
18.
2009

Adi Laurentiu Tarca; Sorin Draghici; Roberto Romero

Developing classifiers for the detection of cancer using multi-analytes.
Methods in molecular biology (Clifton, N.J.) 2009;520():259-72.
19.
2009

Adi Laurentiu Tarca; Sorin Draghici; Purvesh Khatri; Sonia S Hassan; Pooja Mittal; Jung-Sun Kim; Chong Jai Kim; Juan Pedro Kusanovic; Roberto Romero

A novel signaling pathway impact analysis.
Bioinformatics (Oxford, England) 2009;25(1):75-82.
20.
2009

D Montenegro; R Romero; S S Kim; A L Tarca; S Draghici; J P Kusanovic; J S Kim; D C Lee; O Erez; F Gotsch; et al.

Expression patterns of microRNAs in the chorioamniotic membranes: a role for microRNAs in human pregnancy and parturition.
The Journal of pathology 2009;217(1):113-21.
21.
2008

Yu Mi Han; Roberto Romero; Jung-Sun Kim; Adi L Tarca; Sun Kwon Kim; Sorin Draghici; Juan Pedro Kusanovic; Francesca Gotsch; Pooja Mittal; Sonia S Hassan; et al.

Region-specific gene expression profiling: novel evidence for biological heterogeneity of the human amnion.
Biology of reproduction 2008;79(5):954-61.
22.
2008

Jung-Sun Kim; Roberto Romero; Adi Laurentiu Tarca; Christopher LaJeunesse; Yu Mi Han; Mi Jeong Kim; Yeon Lim Suh; Sorin Draghici; Pooja Mittal; Francesca Gotsch; et al.

Gene expression profiling demonstrates a novel role for foetal fibrocytes and the umbilical vessels in human fetoplacental development.
Journal of cellular and molecular medicine 2008;12(4):1317-30.
23.
2008

Seung Yon Rhee; Valerie Wood; Kara Dolinski; Sorin Draghici

Use and misuse of the gene ontology annotations.
Nature reviews. Genetics 2008;9(7):509-15.
24.
2008

Johanne Holm Toft; Ingrid Alsos Lian; Adi Laurentiu Tarca; Offer Erez; Jimmy Espinoza; Irina Poliakova Eide; Line Bjørge; Sorin Draghici; Roberto Romero; Rigmor Austgulen

Whole-genome microarray and targeted analysis of angiogenesis-regulating gene expression (ENG, FLT1, VEGF, PlGF) in placentas from pre-eclamptic and small-for-gestational-age pregnancies.
The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians 2008;21(4):267-73.
25.
2008

Sorin Draghici; Adi L Tarca; Longfei Yu; Stephen Ethier; Roberto Romero

KUTE-BASE: storing, downloading and exporting MIAME-compliant microarray experiments in minutes rather than hours.
Bioinformatics (Oxford, England) 2008;24(5):738-40.
26.
2007

Ho-Sheng Lin; Harvinder S Talwar; Adi L Tarca; Alexei Ionan; Madhumita Chatterjee; Bin Ye; Jerzy Wojciechowski; Saroj Mohapatra; Marc D Basson; George H Yoo; et al.

Autoantibody approach for serum-based detection of head and neck cancer.
Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2007;16(11):2396-405.
27.
2007

Sorin Draghici; Purvesh Khatri; Adi Laurentiu Tarca; Kashyap Amin; Arina Done; Calin Voichita; Constantin Georgescu; Roberto Romero

A systems biology approach for pathway level analysis.
Genome research 2007;17(10):1537-45.
28.
2007

Sonia S Hassan; Roberto Romero; Adi L Tarca; Sorin Draghici; Beth Pineles; Andrej Bugrim; Nahla Khalek; Natalia Camacho; Pooja Mittal; Bo Hyun Yoon; et al.

Signature pathways identified from gene expression profiles in the human uterine cervix before and after spontaneous term parturition.
American journal of obstetrics and gynecology 2007;197(3):250.e1-7.
29.
2007

Daniel Montenegro; Roberto Romero; Beth L Pineles; Adi L Tarca; Yeon Mee Kim; Sorin Draghici; Juan Pedro Kusanovic; Jung-Sun Kim; Offer Erez; Shali Mazaki-Tovi; et al.

Differential expression of microRNAs with progression of gestation and inflammation in the human chorioamniotic membranes.
American journal of obstetrics and gynecology 2007;197(3):289.e1-6.
30.
2007

Purvesh Khatri; Calin Voichita; Khalid Kattan; Nadeem Ansari; Avani Khatri; Constantin Georgescu; Adi L Tarca; Sorin Draghici

Onto-Tools: new additions and improvements in 2006.
Nucleic acids research 2007;35(Web Server issue):W206-11.
31.
2007

Adi L Tarca; Vincent J Carey; Xue-wen Chen; Roberto Romero; Sorin Drăghici

Machine learning and its applications to biology.
PLoS computational biology 2007;3(6):e116.
32.
2007

K L Streicher; Z Q Yang; S Draghici; S P Ethier

Transforming function of the LSM1 oncogene in human breast cancers with the 8p11-12 amplicon.
Oncogene 2007;26(14):2104-14.
33.
2007

Beth L Pineles; Roberto Romero; Daniel Montenegro; Adi L Tarca; Yu Mi Han; Yeon Mee Kim; Sorin Draghici; Jimmy Espinoza; Juan Pedro Kusanovic; Pooja Mittal; et al.

Distinct subsets of microRNAs are expressed differentially in the human placentas of patients with preeclampsia.
American journal of obstetrics and gynecology 2007;196(3):261.e1-6.
34.
2007

Michael A Tainsky; Madhumita Chatterjee; Nancy K Levin; Sorin Draghici; Judith Abrams

Multianalyte tests for the early detection of cancer: speedbumps and barriers.
Biomarker insights 2007;2():261-7.
35.
2006

Sorin Drăghici; Sivakumar Sellamuthu; Purvesh Khatri

Babel's tower revisited: a universal resource for cross-referencing across annotation databases.
Bioinformatics (Oxford, England) 2006;22(23):2934-9.
36.
2006

Adi L Tarca; Roberto Romero; Sorin Draghici

Analysis of microarray experiments of gene expression profiling.
American journal of obstetrics and gynecology 2006;195(2):373-88.
37.
2006

Purvesh Khatri; Valmik Desai; Adi L Tarca; Sivakumar Sellamuthu; Derek E Wildman; Roberto Romero; Sorin Draghici

New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate.
Nucleic acids research 2006;34(Web Server issue):W626-31.
38.
2006

Madhumita Chatterjee; Sorin Draghici; Michael A Tainsky

Immunotheranostics: breaking tolerance in immunotherapy using tumor autoantigens identified on protein microarrays.
Current opinion in drug discovery & development 2006;9(3):380-5.
39.
2006

Sorin Draghici; Purvesh Khatri; Aron C Eklund; Zoltan Szallasi

Reliability and reproducibility issues in DNA microarray measurements.
Trends in genetics : TIG 2006;22(2):101-9.
40.
2006

Madhumita Chatterjee; Saroj Mohapatra; Alexei Ionan; Gagandeep Bawa; Rouba Ali-Fehmi; Xiaoju Wang; James Nowak; Bin Ye; Fatimah A Nahhas; Karen Lu; et al.

Diagnostic markers of ovarian cancer by high-throughput antigen cloning and detection on arrays.
Cancer research 2006;66(2):1181-90.
41.
2006

Madhumita Chatterjee; Alexei Ionan; Sorin Draghici; Michael A Tainsky

Epitomics: global profiling of immune response to disease using protein microarrays.
Omics : a journal of integrative biology 2006;10(4):499-506.
42.
2005

Sanjay N Rakhade; Bin Yao; Sharlin Ahmed; Eishi Asano; Thomas L Beaumont; Aashit K Shah; Sorin Draghici; Raul Krauss; Harry T Chugani; Sandeep Sood; et al.

A common pattern of persistent gene activation in human neocortical epileptic foci.
Annals of neurology 2005;58(5):736-47.
43.
2005

Purvesh Khatri; Sorin Drăghici

Ontological analysis of gene expression data: current tools, limitations, and open problems.
Bioinformatics (Oxford, England) 2005;21(18):3587-95.
44.
2005

Sorin Draghici; Madhumita Chatterjee; Michael A Tainsky

Epitomics: serum screening for the early detection of cancer on microarrays using complex panels of tumor antigens.
Expert review of molecular diagnostics 2005;5(5):735-43.
45.
2005

Otto Muzik; Siamak Pourabdollah; Csaba Juhasz; Diane C Chugani; James Janisse; Sorin Draghici

Application of an objective method for localizing bilateral cortical FDG PET abnormalities to guide the resection of epileptic foci.
IEEE transactions on bio-medical engineering 2005;52(9):1574-81.
46.
2005

Purvesh Khatri; Bogdan Done; Archana Rao; Arina Done; Sorin Draghici

A semantic analysis of the annotations of the human genome.
Bioinformatics (Oxford, England) 2005;21(16):3416-21.
47.
2005

Purvesh Khatri; Sivakumar Sellamuthu; Pooja Malhotra; Kashyap Amin; Arina Done; Sorin Draghici

Recent additions and improvements to the Onto-Tools.
Nucleic acids research 2005;33(Web Server issue):W762-5.
48.
2005

Sorin Draghici; Purvesh Khatri; Yanhong Liu; Kitty J Chase; Elizabeth A Bode; David A Kulesh; Leonard P Wasieloski; David A Norwood; Jaques Reifman

Identification of genomic signatures for the design of assays for the detection and monitoring of anthrax threats.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2005;():248-59.
49.
2005

Stephen A Krawetz; Sorin Draghici; Robert Goodrich; Zhandong Liu; G Charles Ostermeier

In silico and wet-bench identification of nuclear matrix attachment regions.
Methods in molecular medicine 2005;108():439-58.
50.
2004

Sorin Draghici; Dechang Chen; Jaques Reifman

Applications and challenges of DNA microarray technology in military medical research.
Military medicine 2004;169(8):654-9.
51.
2004

Bin Yao; Sanjay N Rakhade; Qunfang Li; Sharlin Ahmed; Raul Krauss; Sorin Draghici; Jeffrey A Loeb

Accuracy of cDNA microarray methods to detect small gene expression changes induced by neuregulin on breast epithelial cells.
BMC bioinformatics 2004;5():99.
52.
2004

Purvesh Khatri; Pratik Bhavsar; Gagandeep Bawa; Sorin Draghici

Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments.
Nucleic acids research 2004;32(Web Server issue):W449-56.
53.
2004

Harvey I Pass; Zhandong Liu; Anil Wali; Raphael Bueno; Susan Land; Daniel Lott; Fauzia Siddiq; Fulvio Lonardo; Michele Carbone; Sorin Draghici

Gene expression profiles predict survival and progression of pleural mesothelioma.
Clinical cancer research : an official journal of the American Association for Cancer Research 2004;10(3):849-59.
54.
2003

Sorin Draghici; Olga Kulaeva; Bruce Hoff; Anton Petrov; Soheil Shams; Michael A Tainsky

Noise sampling method: an ANOVA approach allowing robust selection of differentially regulated genes measured by DNA microarrays.
Bioinformatics (Oxford, England) 2003;19(11):1348-59.
55.
2003

Sorin Draghici; Purvesh Khatri; Pratik Bhavsar; Abhik Shah; Stephen A Krawetz; Michael A Tainsky

Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate.
Nucleic acids research 2003;31(13):3775-81.
56.
2003

Olga I Kulaeva; Sorin Draghici; Lin Tang; Janice M Kraniak; Susan J Land; Michael A Tainsky

Epigenetic silencing of multiple interferon pathway genes after cellular immortalization.
Oncogene 2003;22(26):4118-27.
57.
2003

G Charles Ostermeier; Zhandong Liu; Rui Pires Martins; Rikki R Bharadwaj; James Ellis; Sorin Draghici; Stephen A Krawetz

Nuclear matrix association of the human beta-globin locus utilizing a novel approach to quantitative real-time PCR.
Nucleic acids research 2003;31(12):3257-66.
58.
2003

Sorin Draghici; Frank Graziano; Samira Kettoola; Ishwar Sethi; George Towfic

Mining HIV dynamics using independent component analysis.
Bioinformatics (Oxford, England) 2003;19(8):981-6.
59.
2003

Pascale Anderle; Manuel Duval; Sorin Draghici; Alexander Kuklin; Timothy G Littlejohn; Juan F Medrano; David Vilanova; Matthew Alan Roberts

Gene expression databases and data mining.
BioTechniques 2003;Suppl():36-44.
60.
2003

Sorin Draghici; Purvesh Khatri; Abhik Shah; Michael A Tainsky

Assessing the functional bias of commercial microarrays using the onto-compare database.
BioTechniques 2003;Suppl():55-61.
61.
2003

Sorin Draghici; Purvesh Khatri; Rui P Martins; G Charles Ostermeier; Stephen A Krawetz

Global functional profiling of gene expression.
Genomics 2003;81(2):98-104.
62.
2003

Sorin Drăghici; R Brian Potter

Predicting HIV drug resistance with neural networks.
Bioinformatics (Oxford, England) 2003;19(1):98-107.
63.
2002

Sorin Draghici

Statistical intelligence: effective analysis of high-density microarray data.
Drug discovery today 2002;7(11):S55-63.
64.
2002

Sorin Draghici

On the capabilities of neural networks using limited precision weights.
Neural networks : the official journal of the International Neural Network Society 2002;15(3):395-414.
65.
2002

Purvesh Khatri; Sorin Draghici; G Charles Ostermeier; Stephen A Krawetz

Profiling gene expression using onto-express.
Genomics 2002;79(2):266-70.
66.
2002

R Brian Potter; Sorin Draghici

A SOFM approach to predicting HIV drug resistance.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2002;():77-87.
67.
2002

David A Sprecher; Sorin Draghici

Space-filling curves and Kolmogorov superposition-based neural networks.
Neural networks : the official journal of the International Neural Network Society 2002;15(1):57-67.
68.
2001

S Draghici

The constraint based decomposition (CBD) training architecture.
Neural networks : the official journal of the International Neural Network Society 2001;14(4-5):527-50.
69.
2001

S Draghici; A Kuklin; B Hoff; S Shams

Experimental design, analysis of variance and slide quality assessment in gene expression arrays.
Current opinion in drug discovery & development 2001;4(3):332-7.
70.
2000

S Draghici

Neural networks in analog hardware--design and implementation issues.
International journal of neural systems 2000;10(1):19-42.
71.
1997

S Draghici

A neural network based artificial vision system for licence plate recognition.
International journal of neural systems 1997;8(1):113-26.

Sorin Draghici Wayne State University, Computer Science

Sorin Draghici

71 Publications

Sorin Draghici
Wayne State University, Computer Science